CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA DroEre_CAF1_left T----TGCACATGTTTTTGTTTACGCCTTAAGCAGTACACCAACACACGCGCACATTTATTTAGATTCAAGCAATCGAATTGTTATTCTTGGCGAAGGCAACTAAAAACCGACCAAAATA DroMel_CAF1_left T----TGCACATGTTTTTGTTTACGCCTTAAGCAGTACACCAACACACGCACACATTTATTTAGATTCAAGCAATCGAATTGTTATTCTCGGCTGGGGCAACTAAAAACTGACCAAAATA DroYak_CAF1_left CCTTTTGCACATGTTTTTGTTTACGCCTTAAGCAGTA--CCAAC--ACGCGCACATTTATTTAGATTCAAGCAATCGAATTGTTATTCTTGGCGGGGGCAACTAAAAACCGACCAAAATA DroSec_CAF1_left T----TGCACATGTTTTTGTTTACGCCTTAGCCAGTACACCAACACACGTGCACAATTATTTAGATTCAAGCAATCGAATTGTTATTCTTGGCTGGGGCAACTAAAAACTGACCAAAATA DroSim_CAF1_left T----TGCACATGTTTTTGTTTACGCCTTAGCCAGTACACCAACACACGCGCACATTTATTTAGATTCATACAATCGAATTGTTATTCTTGGCTGGGGCAACTAAAAACTGACCAAAATA DroEre_CAF1_left ACTTGAATAAATAAGCTATTTGATTAGACGGATAAATACAAAATGTAGAAA-AAAAGGTTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGC DroMel_CAF1_left ACTTGAATAAATAAGCTATTTGATTAGACAGATAAATATAAAAGGGATAAA-AAAAGGTTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGC DroYak_CAF1_left ACTTGAATAAATAAGCAATTTGATTAGACAGATAAATATAAAAAGTAGAAAAAAAAGGATTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGC DroSec_CAF1_left ACTTGAATAAATAAGCTATTTGATTAGATAGATAAATATAAAAAGGATAAA-AAAATGTCTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGC DroSim_CAF1_left ACTTGAATAAATAAGCTATTTGATTAGATAGATAAATATAAAAAGGATAAA-AAAA-GTCTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGC DroEre_CAF1_left CTTAGACCACTCGGCCATCCTGACTATGAAAGTAACGAGAACCCGAAAATGGCGTGTGAAAATCGTAATTATTTCGTTTTTATGTAAATTAAAAACAT---TATTTTCGGATGCAAATAA DroMel_CAF1_left CTTAGACCACTCGGCCATCCTGACTATGAAAGTAACGAGAACCCGAAAATGCCGTGTAAAAATTCTAGTTATTTCCATCTTATTCCTTTAATTATATAAATTAAAAGCATTTATTT---T DroYak_CAF1_left CTTAGACCACTCGGCCATCCTGACTATGAAAGTAACGAGAACCCGAAAATGTCGTGTAGAAATTATAATTATTTCGAGTGCATACCTTTAATTATGTAAATTAAAATTCTTAAATT---C DroSec_CAF1_left CTTAGACCACTCGGCCATCCTGACTATGAAAGTAACGAGAACCCGAAAACGCCGTGTTAAAATTATAACTATTTCCAGCATATTCTTTTAATTATATAAATTAAGAGCATTTATTT---T DroSim_CAF1_left CTTAGACCACTCGGCCATCCTGACTATGAAAGTAACGAGAACCCGAAAACGCCGTGTAAAAATTCTAGTTATTTCCAGCGTATTCCTTTAATTATATAAATTAAGAGCATGTCTTT---T DroEre_CAF1_left ATTTAAAGAAGCAATAATAA DroMel_CAF1_left TAGGTGTGAATACATAAAAA DroYak_CAF1_left TTAATGGAAATAAATTTAAG DroSec_CAF1_left TATGTGTAAATATATTTAAG DroSim_CAF1_left TAGGTGTAAATATATTTAAG