CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA DroMel_CAF1_left AGCA--ATCTAAT---GTAT-------GCT--CCAAACAAATGGTGATCATTGTGAGGGGCAAAAAAAGTTTTAGTTGGAA-AAATTAATCGTTTTGCTGAATGAAATTGG-ACA-AAAA DroPer_CAF1_left GCC----CCTCAT---CATGGAATTTGCTT--GCCATTCGATGAAGATCAGGAGAGGCAA------ACAACTATCGTTCTTTGTATGGGGAATGGAATGGAAA-AAAAATCACAA-AAAG DroPse_CAF1_left GCC----CCTCAT---CATGGAATTTGCTT--GCTATTCGATGAAGATCAGGAGAGGCAA------ACAACTATCGTTCTTTGTATAGGGAATGGAATGGAAA-AAAAATCACAA-AAAG DroSec_CAF1_left -C-A--ATCTAAT---GAAT-------GCT--CCAAACAAATGGTGATCATTGTGAGGGGCTGAAAAAGTTTATGTTGGAAAAAATTAATCGTTTTGCTGTATGAAATTGA-AAAAAAAA DroSim_CAF1_left GC-A--ATCTAAT---GAAT-------GCT--CCAAACAAATGGTGATCATTGTGAGGGGCTGAAAAAGTTTAAGTTGGAAAAAATTAATCGTTTTGCTGTATGAAATTGA-GAA-AAAA DroYak_CAF1_left ACTA--CATAGCTAATG--G-------ATGCTCCAGACGAATGCTGATCATTGAGAGACGTTCAAAAAAGTTTAAGCTAAA-A----AATAGTTTTTCTGGATGAAATTGAATCA-AAAT DroEre_CAF1_left AAAAGTAGCTAAT---GGAT-------GCT--CCAGACGATTGGTGATCACTGTGAGAGTTTACA-AAAAGTTTGCTGAAAAAAGTTGA-TCGTT-TTCTAGTGAAACTGA-ACA-AAAA DroMel_CAF1_left ATCTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGA-GTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCTGACTCTCAAGAGCCGTAAGATCAAATTTTCTTTT DroPer_CAF1_left ATTCTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAAGTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCTGACTGTT-GGAACAACGAGAGTCAGGACCTCTAC DroPse_CAF1_left ATTCTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAAGTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCTGACTGTT-GGAACAACGAGAGTCAGGACCTCTAC DroSec_CAF1_left ATCTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGA-GTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCTGACTTTTAAGAATTTCAAGGCCAAATTTTGTTTT DroSim_CAF1_left ATCTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGA-GTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCTGACTCTTAAGAATTACAAGGCCAAATTTTGTTTT DroYak_CAF1_left ATCTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGA-GTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCTGACTCTTAAGAGCCCCAAGGTCAAATTTCATTTT DroEre_CAF1_left GTATTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGA-GTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCTGACTGTTA-A----ACT--AGCGAGTGCCCATTT DroMel_CAF1_left GGTTGGGGACCACATACTGAAACGGTTCATTCTCAAAACTGA----AAAGAAGTGTGTGTTTAGCACAAGTAAAAATAGTTTAATTGG---TA DroPer_CAF1_left TCGCCCAATCAA-TT---TAAAGAGTATTTTTAGAGTATTTTAGAGTTGAAACCAA--GCAACGATCATTTAACTAAAACATAATGTC-CAGA DroPse_CAF1_left TCGCCCAATCAA-AT---TAAAGAGTATTTTTAGAGTATTTTAGAGTTGAAACCAA--GCAACGATCATTTAAATAAAACATAATGGC-CAGA DroSec_CAF1_left GGTTGGGGACCACATACTGAAACGGTTCATTCTCGAAACTGA----AAAAAAGTAT--GTTTAGCGCAAGTAAAAATAGTGTAATTGG-TATT DroSim_CAF1_left GGTTGGGGACCACATACTGAAACGGTTCATTCTCGAAACGGG----AAAAAAGTAT--GTTTAGCACAAGTAAAAATAGCGTAATTGG-TATT DroYak_CAF1_left GGTTGG-GACCACATGTAGAAATAGTTTATCCTCGAGTCTGA----CGTAATG--AATGTTAGGCACAAGAAAAAAAATGTTACTTGGCATTA DroEre_CAF1_left -CTAGT-TTCATCA-A--GGGCGCGTTTGGTCT--TAATT-----TTATAAAC---ATAATTATTTCG----ACTAA--GACACTTTT-CAAG