CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   ACG-AAA--GC-ACAAAAGTCCGGAAGACTCCG-AA-AATCCCTTTTGATCTCTGACAACTA-AAAAATGTAAAACTATATCCACAAATTGGTGTTTTAAGCCTAACAAATACTAAAAAA
DroSec_CAF1_left   CAACAGG--GT-ATTCTAACCTTGAGGTAGCAT-AA-AGATTTCTGAG-GCCCAGGATAGAT-GTTTTATACTCTTTATATCCACCAATAGGTAATATGAGCTTAACAAATACTAAAAAA
DroYak_CAF1_left   CCTTGTTGGAT-TCTCGTATCTTTTCTTTAAGA-CTGACTGCGTCAAGATCTCCATTTTGCTCTGAA--CATAGTCCATGG-ATCCTCCT-CAATTAATATTTAAAAAATGCAATAAAAA
DroEre_CAF1_left   TGGCCAAA-ATAGCCGGGATTCATGCTTGCGGCGTC-TTTAAACTTAA-ATCGACATTACGG-GGTTT--CGACAATGCGGGTGCACGGGAGGGGACTTCATGGGATNNNNNNNNNNNNN

DroMel_CAF1_left   TCTATTTTGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTATGACTCT-TTTGAAACAATTCTGCTGAAGATTCTACAGA
DroSec_CAF1_left   TAAATTTTGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCGTGTTATTCT-TTCGAAACCATTCTGCTGAAAATTCTACAGA
DroYak_CAF1_left   TGTAATTTGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTGTTGAACGCTGAGG-ATCCATTCTAATTGGAATTCTTCAGA
DroEre_CAF1_left   NNNNNNNNNNNNCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTGTGCACAG-TGAAGATCCATTCTAATTGGAATTCTACAAA

DroMel_CAF1_left   AGTCTCGTTCTTATGATCATTTGGG-AACTAAGAGTATCTGATATCCCTCCCCTCATCTGACTCCGTGGCGCAAC-
DroSec_CAF1_left   AGTCTTGTTCTTATGATCGTTTGGG-AGCTAACAGTATCTAATAACCCTCCCCTCATCTGACTCCGTGGCGCAAC-
DroYak_CAF1_left   AGTCGAAATACTGCGATCTTTTTCT-GATTAGAAGGATCTAAAA-CCCCGCCCCCATCTGACTCCGTGGCGCAACG
DroEre_CAF1_left   AGTCGAAATACGGTGATCTTTTTTCTCATTAGAAGGATCTAAAAGACCTCCCCTCATCTGACTCCGTGGCGCAA--