CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   C---TCAAGTGCAATACTAGCTTAAAAAAAATGCAGAATTGCTCCTGGTACGAACCGAAGCGCTTCAAACTTAATTCA---CAT-AAT------CAATTATATAAATATGGTAATTTTTA
DroMel_CAF1_left   CGTCTCAAGTGCAATACTAGTTAA---AAAATGCAGAATTGCCCTTGTGACGAACCAAATCGCTTCAAACTTAATTCA---CAT-TT------CTAATAATTTAAAAATGCTAATTGTTA
DroPer_CAF1_left   G---TTATGAATTCGTATTTGCAA---GAACCACGG-----CCTACAAATCAAAGCAGCTCGATGCACCCTTCCGCTTGTACAC-TAATCACGATCAATAATTTCAGATTAAGTTGTTGA
DroPse_CAF1_left   G---TTATGAATCCGTATTTGCAA---GAACCACGG-----CCTACAAATCAAAGCAGCTCGATGCACCCTTCCGCTTGTACAC-TAATCACGATCAATAATTCCAGATTAAGTTGTTGA
DroSec_CAF1_left   C---TCAAGTGCAATACAAGTTTA---AAAATGCAGAATTGCCCTTGTGACGAACCAAAACGCTTTAAACTTAATTCC---CAT-TATTT---ATAATAATTTAAAAATTTAAATTGTTA
DroSim_CAF1_left   C---TCAAGTGCAATACAAGTTTA---AAAATGCAGAATTGCCCTTGTGACGAACCAAAACGCTTTAAACTTAATTCA---CAT-TATTT---ATAATAATTTAAAAATTTAAATTGTTA
DroYak_CAF1_left   -------AGTGCAATACTAGCTTTA--ATAGTGCAGAATTGCTCCTGGGACGAACCGAAGCGCTTCAAACGCAATTTGTAACTT-TATTT---ATAATAATATAAATATGGTAATTGTTA
DroAna_CAF1_left   GTC-TCAAGTGCAATACTTGTATAA--AAAACCAAGAGTTGCACTAGAGACGCACCGGAAAATTGTAGATGTTTTTTTTAAAAAGCACAA---ACACTATTATTTATTTTTTATTAAATT

DroEre_CAF1_left   ATATTTGGCAAATGCAAACACTTTCAGGCTGGGGAATGTGCAATACTCAATGTTAAAATCACAGTAC-TAGCCCACTCCACAGCC-G-AAAATTGTTGGCTACATCGACTTTGATCAAT-
DroMel_CAF1_left   GTATAAGGCAGTTGCTAACATTTTCGGGCTGTGAAAAGTGCAATACTCAATGTTAAAAAAACAGTAC-TGCCCCCATCCGCAGCA-G-AAAATTGTTGGCTAGAACGATGTCGGGTAATA
DroPer_CAF1_left   AC-----CCAGCAGTAGGCACTTTCAGGCCAGTGGGTGTGCAATACTGTTCAAATACAACACAGTAT-TGC-CCATCCCCCAGCTTG-AAGGTATCCACCGAACACGAATACACTACACT
DroPse_CAF1_left   AC-----CCAGCAGTAGGCACTTTCAGGCCAGTGGGTGTGCAATACTGGTGAAATACAACACAGTAT-TGC-CCATCCCCCAGCTTG-AAGGTATCCACCGAACACGAATACACTACACT
DroSec_CAF1_left   GTATTAGGCAGTTGCTAACATTTTAAGGCTGTGAAAAGTGCAATACTCAATTAAAAAAAAACAGTAG-TGCCCCAATGCGCAGCA-G-AAAATTGTTGGCTAGATCGATGTCCGGCAATA
DroSim_CAF1_left   GTATTAGGCAGTTGCTAACATTTTAAGGCTGTGAAAAGTGCAATACTCAATTTAAAAAAAACAGTAG-TGCCCCAATGCGCAGCA-G-AAAATTGTTGGCTAGATCGATGTCCGGCAATA
DroYak_CAF1_left   TTAGTTGGCAGTTACTAACACTTTCAGGCTGGGGAATGTGCAATACTTAATGCTAAAATCACAGTAC-TAGCCCAATCCACAGCC-G-AAAATTGTTGGCTACGTAGATTTTAGCTAAT-
DroAna_CAF1_left   GAAGAGGTCTGTCGCAAGCGTTTCCAGGCTGGGGAATGTGCAATACTGAT-CCTAAAATG-TAGTATCTGC-CCAAACCACAGTC-TGGAAA-TGCTGACTACAAAAACAAATTTCCACC

DroEre_CAF1_left   AGTTTTAAACGACCACTCGCGACGACTTTTGGAATTTAAATGCTGGGGGCAAAGAA-CGCGA-AGAAGATCCCGAAAAATA
DroMel_CAF1_left   CGTTTCAAACGACCACTCGCGACGACTCTCGGAATTTGAATGCCGGGGGCAAAGAA-CGCAA-AGAAGATCCCGAA-AAGG
DroPer_CAF1_left   AATTTTCAGTTTTACTGCACGCACTCGCGAACTACCGAAAACAGAA--TCTAGATC-GGCCA-ACGATCTCAAAGAAATAG
DroPse_CAF1_left   AATTTTCAGTTCCACTGCACGCACTCGCGAACTACCGAAAACAGAA--TCTAGATC-GGCCA-ACGATCTCAAAGAAATAG
DroSec_CAF1_left   TTTTTTAAACGACCACTCGCGACGACTCTCGGAATTTGAATGCCGGGGGCAAAGAA-CGCAAAAGAAGATCCCGAA--AAG
DroSim_CAF1_left   TTTTTTAAACGACCACTCGCGACGACTCTCGGAATTTGAATGCCGGGGGCAAAGAA-CGCAAAAGAAGATCCCGAA--AAG
DroYak_CAF1_left   ATTTAAAGACAACCACTCGCGACGACTTTTGGAATTTGAATGCCGGGGGCAAAGAA-CGCGA-AGAAGATCCCGAAAAATA
DroAna_CAF1_left   ATCGACCACTCGCGACAACTCCCGAAATTCGAATGCAGA--GCAAGATCAAAAGCACCAGAA-AAAAAAAAAAAAAAAAAA