CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   ATCTCTAAATTATTTTTGAATACTGATAAGAAATACACTATACTATACACTATATACTATATAGTTTAGATAAGCCTCAAAATCAACTGGAAATGTTTTAACACTTCGATTTTCACGAAG
DroYak_CAF1_left   ATTTTTGTATATCTATAAATTATTTGGAATGCAGATAAGAAATATTTATATTTATACTATATAGTTAAGATAAGCCCCAAAATGAAGTGGAAATATTTTGACACCTTGACTTTCACCAAG
DroMel_CAF1_left   TTTTCTATTTTTGTATATCTCTAAATTATATGGAGTACTGATAGGAAATATTTATACTATATAGTTTAGATAAGCATCAAAATAAGCTGGAAATGTTTTGGCACTTATTATTTCAGCAAG
DroSec_CAF1_left   TTTTCTATTTTTGTATATCTCTAAATTATATGGAATACTGATTGGAAATATTTATACTATATAGTTTAGATAAGCACCAAAATAAACTGCAAATGTTTTGGCACCTTGACTTACAAGAAG
DroSim_CAF1_left   TTTTCTATTTTTGTATATCTCTAAATTATATGGAATACTGATTGGAAATATTTATAATATATAGTTTAGATAAGCACCAAAATAAACTGCAAATGTTTTGGCACTTTGACTTACAAGAAG

DroEre_CAF1_left   CATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGCCGATGCATAACACTTTTTTTCTCG-TTTTGAGAGAATTTTAAA-AATATGCAAAAG-
DroYak_CAF1_left   CATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGCCGATGCATATCACTTTTTTTCTCCTTTTTGAAAGAATTTAAAG-AAGGTGCAAAGGT
DroMel_CAF1_left   CATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGCCGATGCAAGAATTCTTTTTTT-CCATTTAAATGAATCGAATTATTTATGTTATTCGA
DroSec_CAF1_left   CATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGCCGATGCAAACAACTTCTTTTT-CCATTTAAATGAATTGAATATTATATATTATTTTT
DroSim_CAF1_left   CATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGCCGATGCAAACAACTTTTTTTT-CCATTTAAATGAATTGAATAT-ATGTTCTTAAGCT

DroEre_CAF1_left   TATTACTTATTTTCAATAAATATATATTG---------CGCTTTTAAGCTTCATGGATTATTTCGAAACGAGG
DroYak_CAF1_left   TATAATTTGTATTTAATAAAAATATATTC---------CGCTTTTAAACATAATAAATAATTTTTAAAC--GA
DroMel_CAF1_left   TAAC-----AATATATTATATATATATAGATTATTTTTAAGCGAGGTT----ACGACCGGTATTTAACC--AA
DroSec_CAF1_left   AAGCAA---AAAGGAAAAATCAGAGCTT-T-----CCCCATTTCCTTTTACAACAAAGCACTATGGGGC--AT
DroSim_CAF1_left   TCTTAT---TTTTATTGTTCGATAACAATA-----TTTTATATATATTTATATATTATTTTTAAGTAAA--AA