CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   AAATGCCTAAAGAGGGCGCCACAACTAAGCAAC-GAAAAATCCAATAGATGTCGCTAAAGACTAGAATGCTT-----TAGATGAACTATAAACTGATCATTGTCTTCTATGGTACA-TAA
DroMel_CAF1_left   G--ATAA---TGTTTTACACAAAATGCCTAAAGAGGGCGCTAGAACTTAGCAACAAATAATCCAAAAGATGTCGCCTTAGAGGAA-TATAAAGTGATCTTTGTTTTCTTTTGTAAGCAAA
DroYak_CAF1_left   A--TGCCTAAAGAGGGCGGCAGAACAAGGCAAC-GAAAAATCCAATAGGTGTCGCTAAAAACTAGAATGCATTAGATGTGAACTA-TGCAGT--GATCATTGTTTTTTTTTTGTAAATCA
DroWil_CAF1_left   ---TCAA-ATAT--TTGAACACAATACATATAT-TTTTTTTCTAAAATATAATCGATTTTTTATTGAATATAATGAATAATGAAT-GACTTGTTGCAAAAAGTTATTTCTT--TAGGAGA

DroEre_CAF1_left   AAAAATTTATTCCCATACCGGGAATCGAACCCGGGCCTTCTGGGTGAAAGCCAGATATCCTAGCCACTAGACCATATGGGACAT-TAACAACTTGCTGCCAAAACGTAGTTTTGGT-TTG
DroMel_CAF1_left   ACAATATTATTCCCATACCGGGAATCGAACCCGGGCCTTCTGGGTGAAAGCCAGATATCCTAGCCACTAGACCATATGGGACGTCGACAAACCTGTTGTGAAAACGCGGTTTTCTTATTG
DroYak_CAF1_left   AAAAATTATTTCCCATACCGGGAATCGAACCCGGGCCTTCTGGGTGAAAGCCAGATATCCTAGCCACTAGACCATATGGGAT-ATGAAAGGAAGTGTGCCAAACTGCGATTTTGTTATTG
DroWil_CAF1_left   AATTCAAATTTCCCATACCGGGAATTGAACCCGGGCCTTCCGGGTGAGAGCCGGATATCCTAACCACTAGACAATATGGGAG-ATTATCAGAT-AATGACAATATATAATTCCGATTCTG

DroEre_CAF1_left   CATCAATAC----CGGCCTGCATATATTCAGCTTTTAAGATAGGTATTTGCGTGTACCTTCGAAACATAATAAAAAATATAGCTAAAAGA
DroMel_CAF1_left   AATTATTAC----CAACCTGAACGTATTTAACGTATAATGTACTAAAGTGTTTGTTTGCTCATATCGTCGCAATA-ACAATGAGTAACAT
DroYak_CAF1_left   CATGAATGC----CGACCACCATAGACTCAGGTTACAATGTAATAACGTATTTGCTTGGACGTACG-AAACATATTACATGTGTCATATG
DroWil_CAF1_left   A--AAGCAAATTAATATGTATCTACACGAACATAAATGAGGCAAAATGATATAGTTTT---ACTTTGATCCTTTCAGGATTCGTTATACA