CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroAna_CAF1_left   TTAGTTATTATTT-AATTATTTATTTTCTTTCCCTTATGCTTTGCCTTCCTTTT-CGGTCTAGTGAACAATCTACTGAGCATTTGGCTGCCCTGCTTCCAGCTGTTTCCGTGGTGTAGCG
DroMel_CAF1_left   CGCATAAAACGAAAGAAAATGTT-TCATTAGTTTCCGGTCGTTCCACATGGGGC-CTATGAATGAAATGTAGTATTCTCGCTTTGGCTGCTATGGGTTCAACTGTTTCCGTGGTGTAGCG
DroVir_CAF1_left   GACTTATAAATGCAGTTAAAGCATTGAAAAGATACCTAAATATATTGGCCTATTTTCATGCTAAAATATGTGTATCGC--ATTTGGCGAGCAAACATTCAACTGTTTCCGTGGTGTAGCG
DroYak_CAF1_left   GGCCGAAAAATAATGTTTCGTTT-AGTTTCCACTCGTTTCATATTGTGCCGACA-CTATGCATAAAATGTAGTATTGTGACTATGACTGCCATAGTTTCAACTGTTTCCGTGGTGTAGCG
DroSim_CAF1_left   CGAATAAAATGAAAGAAAATGAT-TCGTTAGTTTCCGTTCGTTCCACATTGGAC-CTATGAATGAAATGTAGTATTCTCGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

DroAna_CAF1_left   GTTATCACATCTGCCTAACACGCAGAAGGCCCCCGGTTCGATCCCGGGCGGAAACAGGTCGAAATAACTTTTTTATTTTTATTTTATTTAACTTGAACAAAATTTTAATTTCTATT----
DroMel_CAF1_left   GTTATCACATCTGCCTAACACGCAGAAGGCCCCCGGTTCGATCCCGGGCGGAAACATGTGTCTTTTTTTTTTCTTTTCGTA--AGCAAGAA--AATATTTATATTTTTCT-CG-TGCCAC
DroVir_CAF1_left   GTTATCACATCTGCCTAACACGCAGAAGGCCCCCGGTTCGATCCCGGGCGGAAACATGTCAAATTTTTTATTTTTTCAAAAAAGAAAAAGA--TCTCGAAATCAAAACTG-TTTGT----
DroYak_CAF1_left   GTTATCACATCTGCCTAACACGCAGAAGGCCCCCGGTTCGATCCCGGGCGGAAACAGGTTGACTTTTTTTTGGTACCTTACCGCAATATTT--ATTTTTTTCTCTGCCTG-CAGCTCCAC
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNN--NNNNNNNNNNNNNNNNN-NN-NNNNNN

DroAna_CAF1_left   TTATTTATTTTACTTTA-CTTTTGAATTGT-ATTTAACACTGGAAATCTATAAATTCT-CTACCTAA
DroMel_CAF1_left   CGACGTTTCAACTTTTAATGTATTTAT-AAGCTT-------TTAAATAAAGATAAGCTAAGT-GACA
DroVir_CAF1_left   GCGGAAGATTATCGAGA-CGGACTTTA-TGACTT--CAGTT-----GT-GATCGTGCTGGGAATTAC
DroYak_CAF1_left   TCTTAATTGTATATATATCCGTTTAAA-TATTGAT-AAGCT-----AAATGACACGCCGTCTGCCA-
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-------NNNNNNNNNNNNNNNNNNNNN-NNNN