CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   CATCCCCAGAATTTCAAACTAACGC-A-CTACGAATGAG-TAAGAGGGCTGA--GCTGCTCC-GATGCCAGTTGGTATATTTCACTTTGGACGCGGTCGCTTCACAAGCAGTCGTGGCCG
DroPse_CAF1_left   CGTATGCGGAAA-TTTGTCAAATAG-A-TATTGCATGAAATAATATTAGAGT--CTTTCGCC-ACCCATCTCTGGTATATTCAGCTTTGGACATGAGGCTTCCACAAGCAGTCGTGGCCG
DroSim_CAF1_left   T--CCCCAGAATTTCAAACTAACGC-A-CTACGAATGAG-TAAGAGGGCTGTGACCTGCTCC-GATACCAGTTGGTATATTTCACTTTGGACGCGCTCGCTTCACAAGCAGTCGTGGCCG
DroYak_CAF1_left   CAACCCCAGATTTTCCAACCAGCGC-A-CCACGAATGAG-TAAGAGGGCTGT--GCTGCTCC-GACGCCAGTTGGTATATTTCACTTTGGACGCGCTAGCTTCACAAGCAGTCGTGGCCG
DroAna_CAF1_left   TTTTCCCGAACA-CCGCACTAAGAA-C-GAACAAGAGGG-TTGCTGGACGGG--TCTGCCCTGAGCTCTAGCTGCCTTATTGCACATCCGACCGGCTTCTCACACAAGCAGTCGTGGCCG
DroVir_CAF1_left   GTTTCTGAGTAT-GAGGATGTAAATAATTAAATAAACGA-AAACCAATGTGA--ACGATGTT-GCGGCAAAGC-ATATAACATGCTTTAGACAGGCTGCTCTCACAAGCAGTCGTGGCCG

DroMel_CAF1_left   AGTGGTTAAGGCGTCTGACTCGAAATCAGATTCCCTCTGGGAGCGTAGGTTCGAATCCTACCGGCTGCGAT-GAAGTGT-ATA-TTTTACTTTTGTGAAACTAGTAAATGTTTGCATATA
DroPse_CAF1_left   AGTGGTTAAGGCGTCTGACTCGAAATCAGATTCCCTCTGGGAGCGTAGGTTCGAATCCTACCGGCTGCGATGAAACATT-CATTTCTTTTTTGCACTTTGCTTTAATACGATATTTTTTA
DroSim_CAF1_left   AGTGGTTAAGGCGTCTGACTCGAAATCAGATTCCCTCTGGGAGCGTAGGTTCGAATCCTACCGGCTGCGATAGAAGTTT-ATATTTTTACTTTTGTGAAACTAGAAATTTTGCAAAAAGA
DroYak_CAF1_left   AGTGGTTAAGGCGTCTGACTCGAAATCAGATTCCCTCTGGGAGCGTAGGTTCGAATCCTACCGGCTGCGATAGAAGTTT-CTTTTTACTTTTTTT--TACTATGAAAACCAGTATATTTT
DroAna_CAF1_left   AGTGGTTAAGGCGTCTGACTCGAAATCAGATTCCCTCTGGGAGCGTAGGTTCGAATCCTACCGGCTGCGAAAGGTTCAATTTTTTTTTTATCCAA--ATTTATTTTGTTTT--TATTTTA
DroVir_CAF1_left   AGTGGTTAAGGCGTCTGACTCGAAATCAGATTCCCTCTGGGAGCGTAGGTTCGAATCCTACCGGCTGCGAAAGATTGATTCTTTATTTTTATCTT--TTCTAC-AGAAAAC--ATATTTA

DroMel_CAF1_left   TAA--ATAATTTG-CAGTGCACTTTTTCATTCATACATGATGTT-TTT-GTTGCATTATTATT-TTTATATA
DroPse_CAF1_left   GTA--TTCA-TTTTTACTAATGTAGCATATAAATAGATGAAGAC-TTT-TTTAT-TTCATGAA-ATGAATTT
DroSim_CAF1_left   T----TTTACTTT-TGTGGAACTAGTAAATGGTTGCAAAAAGAAACACTGCAGT-ACTGTAAT-TAATTTAA
DroYak_CAF1_left   TAC--AAGAGGTACAAAGGTACTATAAAACTAACTTGTTAAAAC-TAG-CTTGG-GATGATAA-TACGGAAC
DroAna_CAF1_left   TTTAACTTTTTCTCTATTTTATTATACTTTTAAATATT---AAC-ACA-AGAAA-CTATTAAA-ATTAATAT
DroVir_CAF1_left   CAAATTATTTAACGTAATGAACCGGAAACACAAGTTCC---ACT-AAA-AAATT-CTATTTTGCATTACCTT