CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroAna_CAF1_left   TTTTA-G-TCAGTGATAACTTGAAAG--CTTCCAAAAATAGTTT-CCATTTTGATAAAATCAATGATAAGCGAAAAAAAATAGGCTAACTGTAAATTGAATGGTAGCGTGGCCGAGCGGT
DroPer_CAF1_left   ATATATATGTATCACTTAGCTGATTT--TTGGTTCTTTAAATAG-ATA--TGGCGCGGTTCCATAATTCTTCCATTATAGCCAAGAAATGATTTTCATCGGGGTAGCGTGGCCGAGCGGT
DroPse_CAF1_left   ATATGTATGTATCACTTAGCTGATTT--TTGGTTCTTTAAATAG-ATA--TGGCGCGTTTCCATAATTTGTCCATTATAGCCAAGAAATGATTTTCATCGGGGTAGCGTGGCCGAGCGGT
DroEre_CAF1_left   GGGG--G-TTCTTTTAGTTCTTAGTT--CTTGTTCACAAATAGTTTAGCCCAGATAAGGATGGCAATATGCGATAAGAAATCCGTCGCGGGCCGCAAGTACGGTAGCGTGGCCGAGCGGT
DroMel_CAF1_left   TTAG-AG-TTCTTAAAGTTCTTAGTG--CTGTCAAAATTAGTTT-TTGCGTAGATAAGGACAGCAATATGCGTTAAGAAATCGGACGCCGGACGATAGCATGGTAGCGTGGCCGAGCGGT
DroSec_CAF1_left   GAGTTCT-TCAAGTTCTTAGTTAGTG--CTGTTAAAATTAGTT--TTGCGCAGATAAGGACAGCAATATGCGTTAAGAAATCCGCCGCGGGCCGTCAGCATGGTAGCGTGGCCGAGCGGT
DroSim_CAF1_left   CTTAAAG-TTCTTAAAGTTCTTAGTG--CTGTTAAAATTAGTT--TTGGCTAGATAAGGACAGCAATATGTGTTAAGAAATCCGCCGCGGGCCGTCAGCATGGTAGCGTGGCCGAGCGGT
DroYak_CAF1_left   GGTT--G-TTCTCATAGTTCTTGGTGCACTGGCACAAATAGTT--TGGCCCAGATAAGAATAGCAAAATGAGATAAGAATTCGGTCGCGGGCCGCCAGAACGGTAGCGTGGCCGAGCGGT

DroAna_CAF1_left   CTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCATAAAGGAAATATT-TTTATTTTTTTAATCCCGGAA--CTAAAAATTCCACTCTAGCC
DroPer_CAF1_left   CTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCAGAACAGCAATGTCTCTTTTTGTTTAAGTTTTTGTT--CCAATTAAGCCGT-TAAACC
DroPse_CAF1_left   CTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCAGAACAGCAATGTGTCTTTTTGTTTAAGTTTTTGTT--CCAATTAAACCGT-TAAACC
DroEre_CAF1_left   CTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCAGA-GAGAAACTTTTT-TATTGCAGAAATCCATTTT--CAGCC-AGGGAACGTATAGT
DroMel_CAF1_left   CTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCAGA-AGGAAACTTTTT-TATTGCACAAATCCATTTT--CAGCC-AGGCAACGAATAGT
DroSec_CAF1_left   CTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCAGA-AGGAAGCTTTTT-TATTGCACAAATCCATTTT--CAGCC-GTGGAACGAATAGT
DroSim_CAF1_left   CTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCAGA-AGGAAGCTTTTT-TATTGCACAAATCCATTTT--CAGCC-ATGGAACGAATAGT
DroYak_CAF1_left   CTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCAGT-TGGAAACTTTTTTTATTACACAAATCCATTTTTGTAGTT-TTTAAAGTGTCTGA

DroAna_CAF1_left   AAGAAA-TTGAAC-CAAAATTA----TGAATCAAGGAATAAGCTATGAGTCCTT-CAGTTG--GTG-CTCCTTTTTG
DroPer_CAF1_left   ATAAATGAATCCC-TTA-CTCA-ATTAAAAGATTACAAT--TAGCTATTTTTAAATTA-TT--TTT-CCTATTTCAT
DroPse_CAF1_left   ATAAATGAATCCC-TTA-CTCA-ATTAAAAGATTACAAT--TAGCTATTTTTAAATTA-TT--TTT-CCTATATCAT
DroEre_CAF1_left   TTTTGAAGTGTC--GGA-GCCACAATCTG--AATCGAATTCCCAAAAGCGCC---CATCTC-CATCTAATCAATGTG
DroMel_CAF1_left   TTTTGAAGTGTC--GGA-TCCACAATCTG--AAGCGAATTCCCAAAAGCCCC----ATCTCATCTAATCAAAATGAA
DroSec_CAF1_left   TTTTGAAGTGTCAGATA-TCCAAAATGTG--TAGCGAATTCCCAAAAGCCCC---CATCTC--ATC-CAATCAAAAT
DroSim_CAF1_left   TTTTGAAGTGTCAGATA-TCCAAAATGTG--TAGCGAATTCCCAAAAGCCCC---CATCTC--ATC-CAATCAAAAT
DroYak_CAF1_left   ACCACAATCTGC---TA-TCGAATT-CCC--AACAGCACACATCATCTCATCT--AATCAA--AATGAATTTCCGTT