CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   CTTTTTTTTAT-ATGTAGGCAAT-TATTTTTTTTTTTTT---AGAAAAAAGGCAAAAGAAAAAACATTCAAATTTTAAAT-TTAACATA--AAAAATT-TATTG-AAAAAAAGAGGTTGC
DroMel_CAF1_left   GTCGGGGTCAA-GCAATTGATGT-TTTTTTTTCATTATTTTTAGTTTGCAAACTATATAAAATAAATACGAATTTAAGAT-TT--CAAA--AAAAAAA-AACA--GTATACAAAATTTGC
DroSec_CAF1_left   TTTTATTTTTT-TAGTATGCAAA-CATTTTTATATAGAAATATGGATACAAATTTAAGATTTCAAACAAAAATAAAGGTA-TT--TTTT--ATACATG-TATG--TATAAAAAAATTTGC
DroSim_CAF1_left   ATGCAAACATT-TATATA-TAAAATATAGAATATGGATA-CGAATTAAAGATTTCAAGCAAAAATAAATGTATTTTTTAT-AC--ATTT--TATAGAT-GTATG-TATAAAAAAAGTTGC
DroYak_CAF1_left   ATGTAAAAAAT-TTTGTT-CAAAACAAAAAAAATGTATT-TTAAAGAAAAACCAGAAAATAATACTCTTTTTTAGTTGAA-TT--TAGA--AATATAT-AATAT-AAAAAAAGCGGTTGC
DroAna_CAF1_left   ATGTAACACTACAAAATT-TTGTTTATTTAAAAACAGTTGGTTGAATACTATTATTATAAAATT-TTTTATTATTAAATACAT--AAAAAATTAAACTGAACAAAAAAAAATTATTTTGC

DroEre_CAF1_left   ATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTAAATGCAAGTTGTCCCAGCATAAATATATGCTTGGATAGCAAAACCAGTT
DroMel_CAF1_left   ATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTAAATACTAGATGTCTTACCTTCAATATAAGCTTGGATTGCAAATCCATTG
DroSec_CAF1_left   ATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTAAACGCAACTTGTCTTACCTTCAATATAAGCTTGGATTGCAAATAGATGG
DroSim_CAF1_left   ATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTAAACGCAACTTGTCTTACCTTCAATATAAGCTTGGATTGCAAAACCATAG
DroYak_CAF1_left   ATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTAAACATATCTTGTCCTAGCATAAATATATGCTTGGCTTGGAAAACCAGTT
DroAna_CAF1_left   ATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTTTAGATGG--AGC-CCGAATATTTTGCTATTAATGTCTGTAGCCCCAAAA

DroEre_CAF1_left   GTTTA-TTATTGGGCAAGAAACTGCAAACTACAAAACTACAAAAAAGACACTACAATAATAAGA
DroMel_CAF1_left   GGTCA-TTTCTATAAATTGCTAAAATAGTTTAAGGTTGATTAATAAAATGTAATGCTGAAATAA
DroSec_CAF1_left   GTTAA-CTTCTGTAAATTGCTAAAATAATTATTATAATATAAAGCTGAAGTTCTTTAAAATTAA
DroSim_CAF1_left   GTTAA-TTTCTGTAAATTGCTAAAATAATTATTATAATATAAAGCTGAAGTTCTTTAAAATTAA
DroYak_CAF1_left   ATTCATTTTTGGGGAAAGAAAATGCGCAAACAATGTTGCGATTTTTTGTATGTTTTT-GGTATT
DroAna_CAF1_left   TGTGG-CAACAACCTGTTGTAGG--GGGGCCAATCCGGGCTATGGGGACCCTCCC--CTCAACT