CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   AA----AGTTGAAATTGACTTTCGTCTTATAGCCCACGCAACCACAGACGTG--AACTAAGCGCA-GAGTATAAATGCAAAAGTTCAATGAATGCAATTAGAAAACATTTTCAATAAAAT
DroSec_CAF1_left   AA----CATAGAAATTAACTTTCGACCTATAGCCCACGCAACCCCAGGCGTA--AGCCAAACGCA-CAGAATCGATGCAAAAGTTCGATAAAAGCAATTAGTGAACATTTTCCATAAAAC
DroSim_CAF1_left   AA----CATAGAAATTGACTTTCGTCTTATAGCCCACGCAACACCAGGCGTA--AGCCAAACGCA-CAGAATCGATGCAAAAGTTCGATGAAAGCAATTAGTGAACATTTTCCATAAAAC
DroYak_CAF1_left   CT----ATAAATAAACAAATA-ATTAAAATTGACTTTCGTTTTGTAGCCTATGCAACCAC-AGGCGTAAACCA-AACGCTTAGTATCAAAAACACAATTAAAGAACATTTTTAATAAAAT
DroMel_CAF1_left   ACAAAACATAGAAATTGACTTTCGTCTTATAGCCCACGCAACCCCAGGCGTA--AGCCAAACGCA-CAGAATCG----AAAAGTTCAATGAAAGCAATTAGTGAACATTTTTAATAAAAC

DroEre_CAF1_left   AATAAATAAAA-------AAGAT--AATAAAAAATTGTCTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCACTTGCG
DroSec_CAF1_left   TAATTTCATAATATAAAATGAATAAGAAAAAATAA-ATTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCACTTGTG
DroSim_CAF1_left   TAACTTCATAATATAAAATGAATAGGAAAAAATAA-ATTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCACTTGTC
DroYak_CAF1_left   AATAAAGAATAAGCTAA-TAAGCTAGAAAAAAAATCGTTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCACTTGAG
DroMel_CAF1_left   TATTTTCTAAA-------T-----ATAAAAAAGAA-AATTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCACTTGTG

DroEre_CAF1_left   ATAAAAGCTCAAACT--TGGTGATTACAGAATCATGAACATTGATATGTACAGGATC-TAATCGATCAAGATCATAAACCTGCCTAAAACG----CTCCC-GAATTGTGATGT---TCCA
DroSec_CAF1_left   AAGATCGCCGATAAAAGCTCACATTTGCTGATTAACTTAAAGAATCTTAAAATTTGATATAAAGAGAATTTAAGGGATCAAAATATTATCAAGAGAGAAT-CAATAGCTATTTAAAATTG
DroSim_CAF1_left   AAGATCGCCGATAAAAGCTCACATTTGCTGATTAAGTTAAAGAATCTTAAAATTTGATATAAAGAGAATTTAAAGGATCAAAATATTATCAAGAGAGAAT-CAATAGCTATTTAAAATTG
DroYak_CAF1_left   ATGATCGCCGATAAAAGCTCTCATTTCGTAAATAATGTTAAGAATCATAAAATTT-ATATGTATAGAATTTAATGGATCAACAGTATCACAGAATCTAGTGTACCATTTTACTCTACGAG
DroMel_CAF1_left   AAGATCGCCGATAAAAGCTCACATTTGCTGATTAAGCTTAAGAATCATACAAATTGATATAAAGAGAATTTAAAGGATCAAAATATTACCAAGAGAGAAT-CAATAGCCTTTTAAAAGTA