CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   --ATTAACCAAAAGGGATTTAAAATAAATGAGCCTTAAATAATTGTTGTTTTATTAATCAGATGTT--GCAGGTT--TTATGC-TTCAATTTGAAAATTTTTAAAAACAAAAATTGAATT
DroMel_CAF1_left   C-ATTAACCAAAAGGGATTTAAAATAAATGAGCCTTAAATAATTGTTGTTTTTTTAAGCC-TCATT--TTATTCGG-AGTTAA-AATGGTTGGAAATT-TTTAAAAAGAAAAAGTAGCTT
DroSec_CAF1_left   --ATTAACCAAAAGGGATTAAAAATAAATGAGCCTTAAGTAATTGTTGTTTTATTAACCT-TGGAG--TAAAAAA--GAT-TATTTCACTGAAATGCAGGATTTAAAAAAAAAGGAGATT
DroYak_CAF1_left   CCATTAACCAAAAGGGATTAAAAATAAATGAGCCTTAAATAATTGTTGTTTTATTCACTA-GAAAA--TTTCGAG--TTC-GGTGTCAAACTTTTGCTTGAGTCAAAAAATAATGA-TTT
DroSim_CAF1_left   --T-TAACCAAAAGGGATTAAAAATAAATGAGCCTTAAGTAATTGTTGTTTTATTAACCT-CGGAGTAAA--AAAGATCATTT-CACTGAAATGCAAGAATTAAAAAAAAAAAGGAAATT

DroEre_CAF1_left   GCCGAAACCCGGGATTGAACCGGGGACCTTTAGATCTTCAGTCTAACGCTC-TCCCAACTGAGCTATTTCGGCAGTTGCAGTGATGGTGCCGAAAATGGCACTA-GTGCTAAAGCGCAGT
DroMel_CAF1_left   GCCGAAACCCGGGATTGAACCGGGGACCTTTAGATCTTCAGTCTAACGCTC-TCCCAACTGAGCTATTTCGGCAGATGTGGCGATAGTACAGAATATCGGATTA-GTGCTA--GCGTGGA
DroSec_CAF1_left   GCCGAAACCCGGGATTGAACCGGGGACCTTTAGATCTTCAGTCTAACGCTC-TCCCAACTGAGCTATTTCGGCAGATGTTACGAGCGTGCAGAATATGGCACTACC--GTG--GATTGAA
DroYak_CAF1_left   GCCGAAACCCGGGATTGAACCGGGGACCTTTAGATCTTCAGTCTAACGCTC-TCCCAACTGAGCTATTTCGGCGGATGCTAAGGTTCTGCCTAAAGTGGCACTAGTATTAA--GCTCGTA
DroSim_CAF1_left   GCCGAAACCCGGGATTGAACCGGGGACCTTTATATCTTCATTCTAACGCTCCTCCCCACAGAGCTATTTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN---NNNNNN

DroEre_CAF1_left   T-TTTTAAAGTTATGGTACTCGTCTTTGCT-AAATGAAT-TTCGAATTG-TACAACACTGCCAGCAATTAGA-CTCAAACCATCACTGGT--
DroMel_CAF1_left   T-TTCAAAAGTTTTGGTACTCGTCATTGCT-AGATGGAT-TTTGAATTT-TACAACACTGAATGCACCTAGA-CTCAAACCTTTACTGGTGT
DroSec_CAF1_left   AAAGTTTGGTCTTTGCTAATTGGATTTTGAATTTTACAACACTGAATGC-ACCTAGACA----CAAACCATTACTGG-TGTGAAAATCGGCT
DroYak_CAF1_left   T-ATAATAAGTAATTGGTAGTGGTAGTCGT-CTTTGCTAGATGGATTTCGAATTTTACA----ACACTGACAACAATTAGACTCAAACCATC
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN----NNNNNNNNN-NNNNNNNNNNNNNNNNNNN