CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroAna_CAF1_left   AACAAGGCAACAGAATATAATAAATGCATTTTAAAATACATTTTTCCAAACATTAAAACGCAAAGGTATTCAAAGGTGCCTTCGTTGGGGAGAACAACTACAAGTAGACAGTTTAACCGC
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
DroMel_CAF1_left   GGTGCACGTACTTTATAAGGAATTTTATGCCTTGTTCATTTTTAAATTTATAAATAGAAAATATACAGTGGTGACTTTAAAACATGTCCTAAGAGGCAGACTAAGGACACACTTTAGTCA

DroAna_CAF1_left   ATGGGTCTTCAAGTACCATATTGTCTAGTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCGATTCCCGGTATGGGAAACGTTTATTGTTAACTTTGTTATTACTCT-TGGCT
DroSim_CAF1_left   NNNNNNNNNCAAGTCCCATATTGTCTAGTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCGATTCCCGGTATGGGAAACTTTTTTGCCTAAATTTCCTTTTTTTAT-TTTGT
DroMel_CAF1_left   CCTTCCAGACAAGTCCCATATTGTCTAGTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCGATTCCCGGTATGGGAAACTTTTTTGCCTAATTTCGCTTTTTTTTTATTTGT

DroAna_CAF1_left   TTTTATCT-ATCTTATATGTGAATTGCACACTTAT-----AT----TATTTTTATGAA----AATTG-GTCTATCTGATGTTT--------AAATATAAATTAAAAACAAAAGAATTGTA
DroSim_CAF1_left   TTTTTTCC-CTTAGGGGGTTAAAAACTTAAGGCTTTGTTAACGGGGTTGGTATACTTATTGACT-AACCATTACATATGTTTT--------CATTCCAAATTACAATTTTGTCGTTTTTT
DroMel_CAF1_left   TACCATCAGAGGGTTAATAATTTTGGGCTTTGTTA-----AAGGGGTTGAC----TGA----CCATT-ATACAGAGGTGGTCAAAAGTATTTCCACAACGA--GCTTTTTTTTTCAATTA

DroAna_CAF1_left   TT--TGAGAACCG
DroSim_CAF1_left   GT--TAAATAGTT
DroMel_CAF1_left   GTTGACAATGGTT