CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   GCTTTTGAAACTTTGGCACGATATTCGGAGGCTATTCACGATATATCGATTAAAACCATACATTTTTTACGTGTGTAAAGGTGGG-AACTAACTTAAGGGGCGAAAAAAGTATATATAT-
DroMel_CAF1_left   TCATGATCCGTTGAAGAAAACAATAACCTCAGTCATTGATACCTTTTTAGCGACGCTCTATAAAAAAATTTAGTTAAAAAAAGGG-GTCAAGCTTAGTAGGCAAAAAAC--AAAGAGATT
DroSec_CAF1_left   GTATTAAAAATCTCATATTTGTGATCCGCTTAAGAAAACATTGATGCCTTTTTCGCTCTATTAAAAAAATTGGATTTTAAAAAAG-GTCATACTCAGTAGGCAAAATAC--AAAGAGAT-
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAG-GTCATACTCAGTAGGCAAAAAAC--AAAGAGAT-
DroPer_CAF1_left   GATTTGTAATCTTGTGAAAAATTAGAAAAACTT----AACACAAATCTCGCTATATCTTTCATTAGTTCCTTTACATTTGTAGTTTTTTTTAATCGTGTGAAAAATGAG--AAAAGAGA-
DroPse_CAF1_left   GATTTGTAATCTTGTGAAAAATTAGAAAAACTT----AATACAAATCTCACTATATCTTTCATTAGTTCCTTTATTTTTGTATTTTTTTCTAATCGTGTGAAAATTTGG--AAAAGAGA-

DroEre_CAF1_left   TAAAGGGCGGCCAAACTAAAAAATGCCGCCCCCGGGTGGACTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTAACCAATTGCGCCACGGAGGCCACTGCGCTGCGTTCGTCAA
DroMel_CAF1_left   CCACAGGTAAAAT----AGAAATATTCGCCCCCGGGTGGACTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTAACCAATTGCGCCACGGAGGCTGTTGCGCTGCCTCCGTCAA
DroSec_CAF1_left   TCACAGGTAAAAT----AGAAATATCCGCCCCCGGGTGGACTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTAACCAATTGCGCCACGGAGGCTGTTGCGCTGCGCTTGTCAA
DroSim_CAF1_left   TCACAGGTAAAAT----AGAAATATTCGCCCCCGGGTGGACTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTAACCAATTGCGCCACGGAGGCTGATGCGCTGCGCTCGTCAA
DroPer_CAF1_left   ATAC----AAAAA----AGGTTGTTCCGCCCCCGGGTGGACTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTAACCAATTGCGCCACGGAGGCTGCTGTTCTGGCGCGGTCAA
DroPse_CAF1_left   ATAC----AAAAA----AAGTTGTTCCGCCCCCGGGTGGACTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTAACCAATTGCGCCACGGAGGCTGCTGTTCTGGCGCGGTCAA

DroEre_CAF1_left   GTGGCGGGTTTCAGGATCAGCAATGCACTTTAATACTCGTCTGATAAATT--GCAATAAATCACTGTCATCGTTGACTTAT-AA
DroMel_CAF1_left   GTGGCTGCTTTCACGAACGCCAATGCATTTTAGTGCCTAATTTCCAATAA--ATCACTGCCGTCGTTGACTTATAAGCTCC-TT
DroSec_CAF1_left   GTGGCGGGTTTCAGGATCACCAATGCATTTTAGTGCCTAAATTCCAATAA--ATCACTGTCGTCGTTGACCTATAAGCTCC-TC
DroSim_CAF1_left   GTGGCGGGTTTCAGGATCACCAATGCATTTTAGTGCCTATT-TCCAATAA--ATCACTGTCGTCGTTGACCTATAAGCTCCTCA
DroPer_CAF1_left   GTGGCGTTGTTGAGCGGCAGGAATGTTCTCTGATGGG-GCCCCCCACAACGAAACTGCTTTGGGGCTTGATTACAG-ATAT-TC
DroPse_CAF1_left   GTGGCGTTGTTGAGCGGCAGGAATGTTCTCTGATGGG-GCCCCCCACAACGAAACTGCTTTGGGGCTTGATTACAG-ATAT-TC