CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   TTTTTTTAAATACTACTTTT--ATCAAAGATTTTTTTTATTAATCCTTAAAGTTTTTAAAAACTGATAAATTTTACTTATTGGTATTCTTTTTGAATCTAAGTAAATATAAAATGTCATG
DroMel_CAF1_left   ATTTA-ATAAGAAAATTGTCTTCGAAAATTGTTTTTGTATTTATCGATAAAATTCTTAAAAACTGATCAATTTTACTTATTGATATAA-CAAGGTATGTAACTAGATATGAAATATCGAA
DroSec_CAF1_left   ATGACTTCGACTTATCGTTTATCGAAAATTGTTTTTGTATTTATCGATAAAGATTTTAAGAACTGATAAATTTTACTTA-TGATATAA-AACGTCATGTA----AG---TAAATATCAAT
DroSim_CAF1_left   CTATC-TTTTTAAATCGCTTATCGAAAATTGTTTTCGTATTTATCGATAAAGATTCTAAGAACTGATCAATTTTACTTATTGATATAA-AAGGTCACGTAAGTAGATATAAAATATCAAC

DroEre_CAF1_left   CAGGTTTCATAGCCTCCGTGGCGCAATTGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTGGTTCGAGTCCACCCGGGGGCGGCTTTTTATTTT-------G------TTTATATGT
DroMel_CAF1_left   CTGGTTCCATAGCCTCCGTGGCGCAATTGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTGGTTCGAGTCCACCCGGGGGCGGTATTTATTATTTTTCATGTTCTTTCATTATTTAT
DroSec_CAF1_left   CTGGTTTCATAGCCTCCGTGGCGCAATTGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTGGTTCGAGTCCACCCGGGGGCGTGAATTATTATTT---TTAGACGTTCTTTTTTTAT
DroSim_CAF1_left   CTGCTTTCATAGCCTCCGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNN

DroEre_CAF1_left   ATTCTTAAAAGCAATAAATAAAATATTAATATATTAATTTTAAATTATTTATGAATTATTGCAAATCAAATAATTGTGAT-TACGGAAGAACAAAAGAATTCT
DroMel_CAF1_left   ATTCTTAACAGCAATAATTAAAATAAA-AAATTGTAATTTAAAATTATTTATTAATTATTGGAAATCTCATATTCATGATCCGTTGAAGAAAACAATAACCTC
DroSec_CAF1_left   ATTCTTAAAATCAATAATTAAAATAAA-AAAATTCAATTACGAATTATTTATGAAGTATTAAAAATCTCATATTTGTGATCCGCTTAAGAAAACATTGATGCC
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN