CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   G--AGAATAATTTTTTTT-TGATTAC--TTCGTCGATCTAGAAGACCACCGATGACGTATATGTATATTTTG--AGG---T-ATGTAAATGAGATTTTATAAG-TTGAAAATAAATAAAA
DroPer_CAF1_left   ATTCCAGGTTCGACTCCT-GGCAGGA--TCGCAGAAATTATCTTTT--TT---CT-TTTGTATAGATTTTTATTTTTCC-C-ACACTTTTCCGCTTGAGAAAC-AGGAA----AATAAAT
DroPse_CAF1_left   T--CCAGGTTCGACTCCT-GGCAGGA--TCGCAGAAATTATCTTTT--TTT--CT-TTTGTATAGATTTTTATTTTTTC-CAACACTTTTCCGCTAGAGAAAC-ACAAA----AATAAAT
DroSec_CAF1_left   A--ATAATTTTTTTATTT-ATTTACC--TCGATCGAGAGAACACAG--AAAAATT-ACAGATCAGTAGATAT--TTTCAGG-TTATTATCAGGTTTTTATATT-TTGCG----GCTTTTT
DroSim_CAF1_left   G--AGAAGAATAATTTTT-TTTATTT--ATTTACCTCGATCGAGAG--AAAAATT-ACAGATCAGTAGATAT--TTTTAGG-TTATTATCATGTTTTTATATT-TTGCA----GCTTTTT
DroMel_CAF1_left   G--TGAAAAATAATTTTTTTATTTATTTACGTCGATGAGACCACAG--AAAAATT-ACAGATCAGTAAT-----TTTAT-G-TTACTTTCTTGTTTTTTATATTTTTCG----GCTTTTT

DroEre_CAF1_left   TATAAGAATAAA----ATAAATAAAATATTTGCTTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCAGTTGCCCCAA
DroPer_CAF1_left   AAAATTGGAAAAAAAAAGAGGAAAAAATTTAA-TTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCACTTGGT-CTT
DroPse_CAF1_left   ATTAATTGGAAA--AAAGAGGAAAAAATTTAA-TTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCACTTGGT-CTT
DroSec_CAF1_left   ATTAATCGTATA----AGAAATAAAATATTAA-TTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCAGTTGCCGCAA
DroSim_CAF1_left   ATTAATCGCATA----AAAAATAAAATATTAA-TTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCAGTTGCCGCAA
DroMel_CAF1_left   ATTAATCGCATA----AAAAATAAAATATTAG-TTTCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCAGTTGCCTCAA

DroEre_CAF1_left   CAGCCGAGAGTAAGGCATACAT-GCTTGTTCTTGTCCGCC--AAGCAGCGGT-GGGACAAACTAGATGAACTAGCTGAA--CATGAGGTTGTG---TACTTTAAGT
DroPer_CAF1_left   -GTCCGTTCCCATCGCCTAAATGACGAGGGACCGAAAGAT--GA-AGCCATT-TTGGC--AGCAGATGAAGAACTAGAA-CCTAGAACCTAGAACCTATGCCCTTC
DroPse_CAF1_left   -CTCCGTTCCCATCGCCTAAATGACGAGGGACCGAAAGAT--GA-GGCCATT-TTGGC--AGCAGATGAAGAACTAGAA-CCTAGAGCCTATGCCCTTCCCACGCA
DroSec_CAF1_left   CGGCCGAGAATAGAGCATAGAG-GCTAGTTCTTGTCCGCC--AA-CAGCGGT-TAGACAAACGAGATGAGCATGCAGTT-GCTAGATGTATGT---ACTTTAAGTA
DroSim_CAF1_left   CAGCCGAGAATAGAGCATACAG-GCTAGTTCTTGTCTGCC--AA-CAGCGGT-TAGACAAACGAGATGAACATACGGTT-GCTAGATGTGTGT---ACTTTAAGTA
DroMel_CAF1_left   CAGCCGAGAATAGAGCATACAC-GCTAGTTCGTGT--CCGCCAG-CAG-CGGTTAGACAAACTAGATGAACATTCGGTTTGCTAGA----TTTGTATGTACTTTAA