CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   TC-------CTTCGCGCCAATCTAATGGAATTTTTTGCGACCGCGAGTGTTTTCAGTCAGCAACCAACAGTGGACTAGTTTTCATTATTTATCAGCCAGCCAGCAACAACAACAACGTAA
DroMel_CAF1_left   TCCCATCTCCTTCGCGCCAATCTAATGGAATTTTTTGCGCCCGCGAGTGTTTTCAGTCAAC---CAACAGTGGACTAGTTTTCATTATTTATCAGC----CAGCACCAACAACAACGTAA
DroSec_CAF1_left   TCGCTTCTCCTTCGCGCCAATCTAATGGGATTTTTTGCGCCCGCGAGTGTTTTCAGTCAAC---CAACAGTGGACTAGTTTCAATTATTTATCAGC----CAGCAAGAACAACAACGTAA
DroSim_CAF1_left   TCGCTTCTCCTTCGCGCCAATCTAATGGAATTTTTTGCGCCCGCGAGTGTTTTCAGTCAAC---CAACAGTGGACTAGTTTCAATTATTTATCAGC----CAGCAACAACAACAACGTAA
DroAna_CAF1_left   TAATGGAATTTTTTCGCCTGCTTG-TGCA--ATTGCTGGC-CTAGCTGGCTAGCTGACTGG---CCGCGCGA-AT--GCGAATCGTGTG-ATTAGT-------GGACTAGTTTTCATTAA

DroEre_CAF1_left   CGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTATCATCATGGC-ACGA-GCAAACCATAGA
DroMel_CAF1_left   CGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTATCATCATGGC-ACAA-GAAAACCATAGT
DroSec_CAF1_left   CGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTATCATCATGGC-ACAA-GAAATCCATAGT
DroSim_CAF1_left   CGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTATCATCATGGC-ACAA-GAAAACCATAGT
DroAna_CAF1_left   CGTACTGCAACCTATGTGGGAGCGAGACGGGGACTCACTGTGCTTATTAAATAGTCAGTCTTTTTCTCTCTCCTATACAAATTGCGGGCGTATCAACATGTCGACAACGTTAATAATAGT

DroEre_CAF1_left   TTTGTGACGTATTATTAAGCAGACATGTTTGTAATTGAAATGAATAAATGCCCTCTATATTTCCAGCAGCAGCCATTCAACCGAATC----C
DroMel_CAF1_left   TTTGTGATGTATTATTAAGCAGACTTGTTTGTAATTGAAATGAATAAATGCCCTCTATATTTCCAGCAGCAGCCATTCGACCGAATC----T
DroSec_CAF1_left   TTTGTGACGTATTATTAAGCAGACATGT----AATTGAAATGAATAAATGCCCTCTATATTTCCAGCAGCAGTCATTCAACCGAATCCGTTT
DroSim_CAF1_left   TTTGTGACGTATTATTAAGCAGATATGTTTGTAATTGAAATGAATAAATGCCCTCTATATTTCCAGCAGCAGCCATTCAACCGAATC----C
DroAna_CAF1_left   TCATGTGCCTATTCTTAAGCTGCCATATCTAATATATATATATATATTATAGTATGTAATCGCCAGGAGAAAAAAAAAAAATG-AAA----T