CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA DroEre_CAF1_left AAATGCC-AATGG-TTCATTTATCCAG--GCCAGGAA-GGTTTGTATT--C-AAGA-GATCCTGTTT-ATCGGGAA-TAGAGACTTCAATGATGATCATTT-TAAACCATTCACAGACAC DroGri_CAF1_left TTGTTCC-CTTAA-ATGCATCGAGAGTTTATCTGATT---TGGTTAGTATTCTATT--ACAAGGTGC-TGTTGTAT-TG-CCCTTGCAGTGATGATAAT-T-TAAACCATTCACAGACAC DroMel_CAF1_left AATGGTT-CATTT-ATAAATTCCAATA--TCTAAAAA-GGTTAGTACG--AAAAGA-GATTCTGTTT-AGCGGAAA-TGAAGATTTCAATGATGATCAC-T-TAAACCATTCACAGACAC DroMoj_CAF1_left CATACAT-CAACC-TGGACGAG-AATA--CCTAATTTAGGTAAGTATT--GCTTGA--CCGAGTGCT-TTCATCGGGTTCCATTTGCAATGATGAACAC-T-TAATTCATTCACTGACAG DroPer_CAF1_left ATGGAAA-TT-AA-TACATGTGGTTGA--ACATTTTA-GGTTAGTATT--GATAGA-CCTTTGTGGGTTAGTAGCA-TGGGGACTTCAATGATGATCAC-T-TAAACCATTCACAGACAC DroPse_CAF1_left ATGGAAA-TT-AA-TGCAAGTGGTTGA--ACATTTTA-GGTTAGTATT--GATAGA-CCTTTGTGGGTTAGTAGCA-TGGGGACTTCAATGATGATCAC-T-TAAACCATTCACAGACAC DroSec_CAF1_left AATGGTT-CTTTT-ATGAAGTCCATTA--TCCAGAAA-GGTTAGTACG--AAAAGA-GATTCTGTTT-AGCGGAAA-TGAAGACTTCAATGATGATCAC-T-TAAACCATTCACAGACAC DroSim_CAF1_left AATGGTT-CTTTT-ATGAAGTCCATTA--TCCAGAAA-GGTTAGTACG--AAAACA-GATTCTGTTT-AGCGGAAA-TGAAGACTTCAATGATGATCAC-T-TAAACCATTCACAGACAC DroVir_CAF1_left TGCACTC-TTCGC-TGGATAAT-AATC--CTGAATTG-GGTTAGTATT--CGTTTAACACGTGTTTT-ATATCCTA-TTGCATTTGCAATGATGATCAC-T-TAAACCATTCACAGACAC DroWil_CAF1_left GATGCCA-AAACAGAAAAAGGACATAA--GAGTGTGA-TGTAAGTTAG--GCATCT--TCAAAACTA-TTACAAAA-GGTTGACTACGTTGATGATCAC-T-TAAACCATTCACAGACAC DroYak_CAF1_left CAATAGTTACTTT-ATAAAGGCGTTTA--TCCAGAAA-GGTTAGTACT--C-CAGA-AATGCTGTTT-ATCGGAAA-TGAAGACTTCAATGATGATCAC-T-TAAACCATTCACAGACAC DroAna_CAF1_left GGGAAGA-GCCCT-TGAAGAATGGAAA--CTTTGCTTCGGTTAGTATT--AAAACC--CAT-TTTGT-GTCATCAC-AGAATGCTTCAATGATGATAAC-TTTAAACCATTCACAGACAC DroEre_CAF1_left CATATAAAGGTCAAGCGCTGACAATCTTCTTCAATATTCTTTTGGAGATAGGGAGTCATGTTTGACTGGTTATGGGCCATGGTTAAAAACTTGGCACTGAGC-ATCATAATGC-ATTGTA DroGri_CAF1_left CATATAAAAGCTAAGCGCTGACAATCTGCTTCAATATTTTTTTGGAGTTTGGGAGTCTTGCTTAGCCGGTTATGGACCCTGGTTAATAAATTGGCACTGAGT-CTTATACCTA-ATGATC DroMel_CAF1_left CATATAAAGGTCAAGCGCTGGCAATCTTCTTCAATATTCTTTTGGAGATAGAGCGTCTTGTTTGACTGGTTATGGGCCCTGGTTAAAAACTTGGCACTGAGC-TTCATAATGC-ATTCTA DroMoj_CAF1_left CATATAAACGTTAAGCGCTGACAAACTTCTTCAATATTCTTTTGATGTAAGGGAGTCTTGCTTAACCGGTTATGTCCCATGGTTAATAATTTGGCACTGAGC-TCTTATAATA-AATAAC DroPer_CAF1_left CATATAAAAGTTGGGTGTAGACAAACTTCTTCAATATTCTTTTGGAGATAGGGAATCTCGCTTGACCGGGTATGGATCATGGTTAAAAAATTGGCACTGAGC-TTCATATACC-AACATT DroPse_CAF1_left CATATAAAAGTTAAGTGTAGACAAACTTCTTCAATATTCTTTTGGAGATAGGGAATCTCGCTTGACCGGGTATGGACCATGGTTAAAAAATTGGCACTGAGC-TTCATATACC-AACATT DroSec_CAF1_left CATATAAAGGTCAAACTCTGGCAATCTTCTTCAATATTCTTTTGAAGATAGAGCGTCTTGTTTGACTGGTTATGGGCCCTGGTTAAAAACTTGGCACTGAGC-TTCATAATGC-ATTCTA DroSim_CAF1_left CATATAAAGGTCAAGCTCTGGCAATCTTCTTCAATATTCTTTTGAAGATAGAGCGTCTTGTTTGACTGGTTATGGGCCCTGGTTAAAAACTTGGCACTGAGC-TTCATAATGC-ATTCTA DroVir_CAF1_left CATATAAAAGTTAAGCTCTGGCAAACTTCTTCAATATTTTTTTGAAGTAAGCGAGTCTTGCTTAGCCGGTTATGGACCCTGGTTAATAAATTGGCACTGAGT-CTTACACTTA-ATGCAC DroWil_CAF1_left CATAATAAAGTTAAATCTTGATAAGCTTCTTCAATATTCTTTTGAAGCTAGCAAGTCGGATTCAGCTGTTTATGGACCTTGGTTAAAAAATTGGCGCTGAGTTAATTT-CTTGAATTTTT DroYak_CAF1_left CATATAAAGGTCAAGCGCTGACAATCTTCTTCAATATTCTTTTGGAGATAGGGAGTCATGTTTGACTGGTTATGGGCCCTGGTTAAAAACTTGGCACTGAGC-ATCGTAATGC-ATTATA DroAna_CAF1_left CATATAAAAGTCAAGCGCTGACAAACTTCTTCAATATTCTTTTGGAGATAGGGAGTCTTGCTTGGCCGGTTATGGACCCTGGTTAAAAATTTGGCACTGAGC-TTCACTCTTT-ACCACA DroEre_CAF1_left AAATGA--A--TTAATA-CCTT--AAGGAA----ATAAACTAAATTTGCTGTTC-TTG-TCTTTTCAGGTTTGGAAC-CTTTGATGAAAAATATTATAATATTGTGG DroGri_CAF1_left TG-CTA--ATGTTTGTG-ACCAAACAAG--AA--TACTAATCCTT-CATCA-TT--CT-CTTTTGCAGGTGCTCTAT-CCGATCTGACAGATCCAAGCTAATGTTGC DroMel_CAF1_left GTATTA--A--TGAAAT-TAGCCTGCGA--AA--CCAAACTTATCGTTCCTGTT-GTTATCTTTTCAGGTTGGCAAC-CTTGGATGAACACAA---TTTGTATCTTG DroMoj_CAF1_left TCCTCT--C--TGTGCT-TTATGAGCAA-ATACTTATACTTCATCTTCTTTTTC-AGGTGCTGGAAGTGTTGGAAAA-GCTTATCCATGGCA-----ATACGCTGTA DroPer_CAF1_left TTTTAT--A--TTACAA-AAGTAGAATG--CG--CCTTACTAATAATAAATTTC-TCT--CTTTGCAGGTTCGACAC-GGCTACAGTTACGTCCC-ACGTGCCTATC DroPse_CAF1_left TTTTAT--A--TTATAA-AAGTAGAATG--CA--CCTTACTAATAATAAATTTC-TCT--TTTTGCAGGTTCGACAC-GTCTAACGTCCCACGTG-CCTATCCACCA DroSec_CAF1_left GAATTA--A--TGAAAA-TAGCCTACGA--AC--CCAAACTTATCGTTCCTGTT-GTTATCTTTTCAGGTTTGGAAC-CTTGGATGAACACAA---TTTGTCTCTTG DroSim_CAF1_left TAATTA--A--TGAAAA-TAGCCTGCGA--AC--CCAAACTTATCGTTCCTGTT-GTTATCTTTTCAGGTTTGGAAC-CTTGGATGAACAAAA---TTTGTATCTTG DroVir_CAF1_left CAATTATGT--TGTCAA-ATAGCAAATT--TA--CTTATGCCACGTTTTCTATT-GCA--GGTGCTCCGAACAATT--GGATC-AG-CTACAGCTGACATTGTTGTA DroWil_CAF1_left TGAATA--C--ATTTTTGCGAAAATAAG---A--TAAAATAATTCGTTTTTTAT-TTCG---TTACAGATGTTCCGA-CCCAAA-G---ACGACA-TTAATATTATT DroYak_CAF1_left AAATTA--A--TGAATT-GCTT--GGGGCATA--TTAAACTTATT--TTT-GCTCTTC-TCTTTTCAGGTTGGGTAC-CTTGGATGAAGAAAAATTATAATCTTGTG DroAna_CAF1_left TAAAAG--A--TGATTG-TGTTG-TCAGCTTA--CTTATCCAT---TTATTTTT-GTA--TATTTACAGATCGAAAAGTGGTTTGGATCGCAAAGGAACCTCCTGTC