CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   -ATCATC---ATCATTATCATCATCTTCGGTAAGTTAGACAATCCCATAAAAAACTGTCCAAGTGAGTA-GTGCCACCAAAAGTTAGCCGCGTTGTGGAAAATCCAAAACAAAGACCATC
DroSec_CAF1_left   CATCATT---ATTATCATCATCATCATCGGTAAGTTAGACAATCCCATTA-AAACTGTCCCAGTGAGTA-GTGCCACCAAAAGTTAGCCGCGTTGTGGAAAATCCAAAACAAGGACCATC
DroSim_CAF1_left   -ATCAGC---GTTATCATCATCATCATCGGTAAGTTAGACAATCCCATAAAAAACTGTCCCAGTGAGTA-GTGCCACCAAAAGTTAGCCGCGTTGTGGAAAATCCAAAACAAAGACCATC
DroYak_CAF1_left   -TTATTCCGGACCATCATCATCATCATCGGTAAGTTAGACAATCCCATAAAAAACTGTCCCAGTGA----GTGCCACCAAAACTTAGCCGCGTTGTGGAAAATCCAAAACAAAGAACATC
DroEre_CAF1_left   -CGGACC---ATCATCATCATCGTCATCATCAT---CCTCATCGGTAAGTTAGACAATCCCATAAAAACTGTCCCAGTGAGTGCCA-CCA-A-AACACCGAAACCTAGCCGA-AACAA--

DroMel_CAF1_left   CCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAACTAAAACT
DroSec_CAF1_left   CCATCTTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAACTGAAATT
DroSim_CAF1_left   CCATCTTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAACTGAAATT
DroYak_CAF1_left   CCACCATCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATACTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGTCATCGGAGTTGAAAGTAAAAGA
DroEre_CAF1_left   GGACCTCCAGCCTGTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAAAATTAAAATGTAAA

DroMel_CAF1_left   GAAATTTGATTGAAACAGAAGTAGAACCGTAATG--AAATGAATGAA--ATATT----AACCCGTTTCTACAATCCCTGA---ATAAAATTATTAA
DroSec_CAF1_left   TAATTGAATCAGAAGTTGAACCTCAATATAAAAT--TTTCCATGGAAA-TGGAAATGGAAATGGAAATTA-AAACCAACC---CGTTT----CTAC
DroSim_CAF1_left   TGATTGAAACAGAAGTTGAACCTTAATATAAAATATAAACGAAATATTGAAACC----AACCCGTTTCTACAATCCCTGA---ATAAA----ATTA
DroYak_CAF1_left   AAAGAGCATTTGAT-TGAATCGCCAATTGAACAA--TTAATAAGCCCC-TATATTTCTGGGCATACATAT-G--TACATAAAATGTAA----AATA
DroEre_CAF1_left   GTAACAATCGCCCACGGAAATGGCTCATCATAAGT-TAGGCATTTCCC-TGCAAAATC-CACAAAATCCA-CAGCTTACT---ATCCA----CAAA