CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroGri_CAF1_left   TCCATAATTTAGGTGATGTAGCCTACCTTAA-GGGTTGTCCAGATATGTCTTACAATTCGCAATCGGTTTAAGTATTTCTTCCGGTAGATCATCTGTGTTTTGAGGTGATAATTCACTCT
DroMel_CAF1_left   CTAAGACAGATGTCTTGAGGTGAGTTTTTAA-TCCTACCCAATTGACACTTAAAATTCCCAATTCCTTCTGGCCAATACTGATCCTAGAAGCATTATGTTTGCTGGTGTTAAGTCACTCT
DroSec_CAF1_left   CGAAGACAGATGTCGTGAAGTGAGTTTTCAA-TCCTACCCAAAGGACACTTAAAATTCCCAAGTCCTTCTGGCCAATACTGATCCTAGAGGCTTAATATTTGGTGGTGTAAGGTCACTCT
DroSim_CAF1_left   GTGGTATCTAGGTAGCGAAGTGAGTTTTCAA-TCCTACCCAAAGGACACTTAAGATTCCCAAGTCCTTCTGGCCAATACTAATCATAGAGGCCTTATGTTTGCTGGTGTTA--TCACTCT
DroYak_CAF1_left   ACACGACAGCTGTCTTAAAGTGAGTTTGCAATTCCTACTCAAAGGACTCTTACAATTCCCAAGTATTTCTGGCCAATACTGATCCTAGAGGCATAAT-CTTGCTAATGTAAAGTCACTCT

DroGri_CAF1_left   GGCTTCTCTTCAGTTGTCGAATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAGCGCTCTAATGAGTCTAAACTCAATTTTT-TAAGCGCCTGGCGGCATTTGCAGCCGGGC
DroMel_CAF1_left   GGTTTCTCTTCAATTGTCGAATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACACTCTAATGAGTCTAAACACAATTTTTATTGAGGCCTGATAACTTATGCTATCGGGC
DroSec_CAF1_left   GGTTTCTCTTCAATTGTCGAATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGAAACACTCTAATGAGTCTAAACTCAATTTTTATTGAGGCCTGATAACTTATGTTATCGGGC
DroSim_CAF1_left   GGTTTCTCTTCAATTGTCGAATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACACTCTAATGAGTCTAAACTCAATTTTTATTGAGGCCTGATAACTTATGTTATCGGGC
DroYak_CAF1_left   GGTTTCTCTTCAATTGTCGAATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACACTCTAATGAGTCTAAACTCAATTTTTATTAGGGCCTGACAGCTTATGTTATTGGGC

DroGri_CAF1_left   CAATTTGTAAATACATATA-TCATT--AAAATTTG-CTGATCTAATTGTA-A-TTGG--CAAATAAAGTTTTTTA--TT-GTTT---GGGGCATGTTTC--AGT-TTACGTTAAGTTTTG
DroMel_CAF1_left   CAATGAAT-TATATATTTT-AAAAAT-GTTAGTTA-CA--TCTTAATGAA---CTTG--TAAT--TGT-TAGCACAGCCCTTTGTACCGTGGGGAAATACTATTTAGAATCCCA-GAACT
DroSec_CAF1_left   CAATTAAA-TATATATTTT-ACAAATTTATAGTTA-CA--TTTGATTGTACAACGTG--TTAC-CTGTTCAGCAAAACACTTGGTGCAGTGGGGG---ACTATTTAGAATCCTGCGTCTA
DroSim_CAF1_left   CAATTAAT-TATATA--TTTTCA-AATTTTAGTTA-CA--TTTTAATGAATAACTTG--TAAC--TGTTCAGCACCACACTTGGTGCAGTGGGGG---ACTATTTAGAATCCCAAAACTG
DroYak_CAF1_left   CAATAGAT-AATACATTTT-ACTT--AGAACTGTTCAGT-ACCACACTTGG--CGCTCCAATA--CAATCAGTACTATATAAAG-----------------------T----CAGCAAAT

DroGri_CAF1_left   AGAGGTGCT-TGTCATGTCAATTAAAATACATTACGT-ACACA---ATA
DroMel_CAF1_left   --G-TCCCAGATCCCAGATCCGCTGTGTTTTCTCTGTAACTCAATCAAA
DroSec_CAF1_left   T-G-TCTCTGGACGCACCGCCTAATTTCAAAAAGAGA-ATTGAGATTTC
DroSim_CAF1_left   AAA-GCTGTGGTTTATCCTTATTTTAGAAGGTGAATC-TCAAATAAAAT
DroYak_CAF1_left   C-T-A-AAATTTGCTGTGGTTTCATTATC---TAAGAGAGTGATA-TAC