CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroGri_CAF1_left   TCCGAGAGCTGTTTTCATAGTTCTCTATCAT-CC--TCAAATTGATTATTCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGCCAACCCGTGATAGAGGTGGAGCAAGCCCCTA
DroMel_CAF1_left   TAA-AGAGAGCA-TTCTTCACTAATGTTTAT-AATTAAATATTTATTATTCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGCCAACCCGTGACAGAGGTGGAGCAAGCCCCTA
DroSec_CAF1_left   CTAGAGAGAGGA-TTCTTCACTAATGTTAAT-AT-TAAATATTTATTATTCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGCCAACCCGTGACAGAGGTGGAGCAAGCCCCTA
DroSim_CAF1_left   CTAGAGAGAGGA-TTCTCCACTAATGATAAT-AT-TTAATATTTATTATTCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGCCAACCCGTGACAGAGGTGGAGCAAGCCCCTA
DroYak_CAF1_left   ACT-AGATCAGTTTTAGCA-ATCTTAATATTTTT-TTCAGATTTATTATTCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGGCAACCCGCAACAGAGGTGGAGCAAGCCCCTA

DroGri_CAF1_left   GCACTCCGTCTGATTCCAAAAATCAGTTTAACATTTGTTGTTCTCCAATGGAGAAACTATCAGATGTTAAGCTGATAAGAACAGATACTACACTTTGATCTTAGCCATAAGGCCGAGAAG
DroMel_CAF1_left   GCACTCCGTCTGATTCCAAAAATCAGTTTAACATTTGTTGTCCTCCAATGGAGGAACTATCAGATGTTAAGCTGATAAGAACAGATACTACACTTTGATCTTAGCCATAAGGCCGAGAAG
DroSec_CAF1_left   GCACTCCGTCTGATTCCAAAAATCAGTTTAACATTTGTTGTCCTCCAATGGAGGAACTATCAGATGTTAAGCTGATAAGAACAGATACTACACTTTGATCTTAGCCATAAGGCCGAGAAG
DroSim_CAF1_left   GCACTCCGTCTGGTTCCAAAAATCAGTTTAACATTTGTTGTCCTCCAATGGAGGAACTATCAGATGTTAAGCTGATAAGAACAGATACTACACTTTGATCTTAGCCATAAGGCCGAGAAG
DroYak_CAF1_left   GCACTCCGTCTGATCCCAAAAATCAGTTTAACATTTGTTGTCCTCCAATGGAGGAACTATCAGATGTTAAGCTGATAAGAACAGATTTAAAAAAAAA-----AGCCATATGGCCAGTAAA

DroGri_CAF1_left   CGATAAC-TTTAACTC-CAAATAGCTTCAGTAC---TCTATAATTTCTCTACTTAAACCAGTTGCGAATT-GT
DroMel_CAF1_left   CGATAAC-TACTCCTT-CCCAGGACA-AAGGAC---TTCATGCGACTGCAGCTAAAATCAGTTGGGAATTACT
DroSec_CAF1_left   CGATAAC-TACTCCAT-CCTAGGACA-AAGGAC---TTCATGCGACTGCAGTTAAAATCAGTTGGGAATTACT
DroSim_CAF1_left   CGATAAC-TACTCCTT-CCTAGGACA-AAGGAC---TTCATGAAATTGCAGCCAAGACCAGTTGGGAATTACT
DroYak_CAF1_left   TGTTTACCTGCCTCTGGGGCAGGCCA-AGTGAGTGTTATTGTGTTTTTATTATTATTTTTTTTTTTTTTTTTT