CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA DroEre_CAF1_left AACGTTGAA--GAGCAAATTA-CCATGCATTTCTGCGAT--TA--AACCTTTTACCTT-T-TGAAAATCATCCGCATCAAGGGCCAGCGGAAATTCTCA--GGTGCCGTGGACGCC-ACA DroGri_CAF1_left ATTAAAAAT--ATCAAAATAA-GATTGTCGAAAAATTAA--TT--TGATTGTTTTTAG-CTGCAAAAT---ACTTGGAGAAAACGATGCTTATATATTTGTTGGGCTTTTGACACT-CAA DroMel_CAF1_left CATTTACGA--GGAA-GC-CA-TCGGTTCAAACTGCGATT-AA--AACCTTTTACCTT-CATAAAAACCAACAGCATCAAGGGCTAGCGGGAATTCTCA--GGTGCTGCGGACGAC-TCA DroMoj_CAF1_left GATTGATGA--GTGTCGTACAAAGCAGCTTCTATGCGTG--CA--TCACTTCAATGAA-CAGCTTTAA---TAGCAATGTTGTGATAAGTTAAATACTATACA-ACACTTGACAGA-AAA DroSec_CAF1_left TACCATGCA--TTTACGA-GG-CCATCGCAAATAGC-GAT-TA--GACCTTTTACCTT-CGTAAAAACCAACAGCATCAAGGGCTGGCGTAAATTCTCA--GGTGCTGTGGACGAA-TCA DroSim_CAF1_left CATGCATTT--ACGAGGC-CA-TCGCTTCAAATTGCGAT--TA--AACCTTTTACCTT-CCTAAAAACCAACAGCATCAAGGGCTAGCGGAAATTCTCA--GGTGCTGTGGACGAA-TCA DroVir_CAF1_left AAGTGCCAAATAATTCAG-CT-TTTGTACG-TCAATTAG--TT-TTACCATAAACTGC-CAC-ACGTACATATTATTCAATTGTTAGCTACATTTTATA--TAACTTTT-GACACTCGA- DroYak_CAF1_left CATGCATTT--CTGAAAT-CG-TCGGTCCAATCTGCGAT--TA--AACCTTTTACCTT-CTCGAAAAACATCAGCATCAAGGGCCAGCGGAAATTCTGA--GGTGCTGTGGACATC-ACA DroAna_CAF1_left TGTTGAAAA--GCAAAAA-TG-T---AATGATTTTTGATAAGAACTTTCACCTTTCTAGATAACCCAAGAAGAGTCACAACTCCAACCC-TCTATTGCT---TGACTTTAGACGCC-AGA DroEre_CAF1_left GCGACAAGCGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTGAAT---GAGAAAAATTTT---TTATA-TCTT---TTTA DroGri_CAF1_left TTTGTAAGAGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTGAGTA--CGATTACTTTTT---TCATT-TATT---TAGA DroMel_CAF1_left TTGACAAGCGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTGATA---AGCAAAGAACTT-TTTTGTT-ATTT-ATTTTT DroMoj_CAF1_left TTCATTGGTGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTGATTC--GAGTTGCATTTT---TTATA-TTAT---TATT DroSec_CAF1_left GCGACAAGCGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTGAAT---GACAAACATTTTTTTTTATT-ATTT-ATTTTT DroSim_CAF1_left GCGACAAGCGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTGAAT---GACAAAATTTTT---ATATT-ATTT-ATTTTT DroVir_CAF1_left TGTTCAAGCGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTAATGAAATGAATTATTTTT---TCGAA-TTTT---TATT DroYak_CAF1_left GCGACAAGCGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTGAGC---AACAAACATTTT---TTTTTATTTA---TTTT DroAna_CAF1_left AAGACATTCGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTGATC---GAATAAGTTTTT---TATTT-TTGTTTATTTT DroEre_CAF1_left TTTTTTAATACATTA-ATTAA-AA---CTCTTCTTTAGC-TTCAGACCT---ATATTAAT-AATCCTTAGTGTAAT-TTAGTA--TAGACTGG--TAAGT-AC--CATCAGCTT---AAA DroGri_CAF1_left ACTTTTTAAATTTAA-TTAAA-AAGTATTTTTAG---TA-TACTAAATT---CGCTGATT-CGGTATTATTTGAGT-TACAGT--GTAAAA----GCGTT-AA--TACTTTACG---ACT DroMel_CAF1_left ATTTTGTTCAATACA-TAAAT-TCA--TACTGTTTTTTA----T-TTTTTAACCTATCATTATTGATTTTAATAT--CGATTG-GCTAGCGCTT-CCATC--T--ACCATTCTA---ACG DroMoj_CAF1_left ATTTAAAGAAAA-TA-TGAGT-TTAAATCCAAAG---AT-AGAGGAAAA---CATTTTTT-CTGCAGATCTTT--C-AATTTT--TTTGGG----TATAT-AA--AATTTTACA---TTT DroSec_CAF1_left ATTTTGTTCAATACT-GAAAT-TCA--TACTGTTTTTTT----GTATTTTAACCTATCATTATTGTTTTTAATAT--CTATAA-ATACCAATTG-GATA---G--CACTTTCTA---CCA DroSim_CAF1_left ATTTTGTTCAATACT-GAAAT-TCA--TACTGTTTTTTT-TTTGTATTT---TAACCTATCATTATTGTTTTAAA--TATATT-TAAATACCAA-TTAGC--TAGCACTTTCTA---CCA DroVir_CAF1_left TGCGTTTTATCACTATTAAAAGTG---CCTTATTTCATT-AATTGTTTG---TATTTTGTAATGAACTTTTCAATTTTAAATT--ACAACACAAAACGTA-AA--GTTTTTATGACATTT DroYak_CAF1_left ATATTGTTTATTTAT-ATTAT-TT---TTCAATAAATTC-ATTTTAGCT---CATCTTTT-ATTTTTAAGCCTATCGTA-TTTGTTTTAATTA--TAGAT-TG--CTTAAGTCT---TAT DroAna_CAF1_left ATTTATT---TATTA-AATAT-TAA--TTATTTATATTTAACATGTACA---TTATTTTT-AAATAT---TTCAG--CTGAAA-TGAGTTTTTA-TCAATATA--CTTACACAT---TTA DroEre_CAF1_left TTCT-------AAGGA-CTCAC DroGri_CAF1_left TTTGC-------CGTC-GGAAT DroMel_CAF1_left ATTT---G--GGGAAA-TTTCA DroMoj_CAF1_left CTAAATAGGTAGTGAA-CTTGA DroSec_CAF1_left TTCT---A--ACGTCT-TAGAG DroSim_CAF1_left TTCT---A-----ACG-TCTTA DroVir_CAF1_left GCCA---C--TCAGCGGACAAG DroYak_CAF1_left TTCT---T--TCTGTT-TAAAT DroAna_CAF1_left TT-----A--CACATA-CTTTC