CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   ACAT-AATGGATAAAAGCGTTTACTCGTACAAAAGGGGTTGCTTCTT-GATTCA-TCGAGACGAATTGAATTTCACGACCGCCCTAATGATTTCT-TATAACATGAAATGGTGCATACTT
DroGri_CAF1_left   CAAAGGAAAAACGAATTTCACAACAATCGTAAATGGGGAGAAAATGT-GGAATACTCACG-GCTCACATATAAGCCAAT-ATCAAATTATAATCA-AATAATGAGAAATGGTGCATACTT
DroMel_CAF1_left   ACCT-AATGGATAAAAGCGTTTCCTCATACAAAAGGGGTTGCTTTTC-GATTCA-TCGAGACACATTGAAGTTCACGACCGCCCTAATGATTTCT-TATAACTTGAAATGGTGCATACTT
DroSec_CAF1_left   ACTT-AATGGATAAAAGCGTTTCATCATACAAAAGGGGTTGCTTTTT-GATTCA-TCGAAACGAATTGAAGTTCACGACCGCCCTAATGATTTCT-TATAACTCGAAATGGTGCATACTT
DroSim_CAF1_left   ACTT-AATGGATAAACGCATTTCATCATACAAAAGGGGTTGCTTTTT-GATTCA-TCGAGACGAATTGAAGTTCATGACCGCCCTAATGATTTCT-TATAACTTGAAATGGTGCATACTT
DroWil_CAF1_left   TCGT-TTATTACAGTTGCTGCTTTTGTCTACTCAAAGGGGGAAATGAATTTCAC-AATCGTCGCTAGGAATTTCACAACAATTCAAATGAGAATT-TGTAA-AAAAAATGGTGCATAGTC
DroYak_CAF1_left   TTCC-AATTTCACAACTTCACCTAATGGATGAAAGGGGTTGCTTCCT-GATTCT-TCGGGACGAATTGAGTTTCACGACCTCCCTAATGATTTCT-TATAACATGAAATGGTGCATACTT
DroAna_CAF1_left   CTTT-GAAGCCCATCAGGAGTGCCTGAAGGAATTTCACAACATAATC-AAATGG-GTTCAACCAAGGGTTGCTCGCAGGATGTTAAGGATTTGTAATCC-AACTCAAATGGTGCATACTC

DroEre_CAF1_left   ACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGG-CAACAAAA--TC
DroGri_CAF1_left   ACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGG-CAACAAAAGACT
DroMel_CAF1_left   ACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGG-CAACAAAA--TC
DroSec_CAF1_left   ACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGG-CAACAAAA--TC
DroSim_CAF1_left   ACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGG-CAACAAAA--TC
DroWil_CAF1_left   ACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCCAACAAAA--TC
DroYak_CAF1_left   ACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGG-CAACAAAA--TC
DroAna_CAF1_left   ACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGG-CAACAAAA--TC

DroEre_CAF1_left   AATGACAAA-CTAAAAAATCAAATAACGG-CGGAGTATGGATAA-AGTTCAAGTTAAAA-AAGGATTACAAGGAAACACA--TAACTTCCAAA
DroGri_CAF1_left   AC-AAAAGAAACATTAAAACATAT-CAAG-CAACAAGAATATG-TAAAGCAACAAAAGC-ACAGAGAAAACAAAGAACTA--TAAATG-AAAT
DroMel_CAF1_left   AATGACAAA-TCGAAAAATCGACAAATGG-CGGAGTAAGGATAAAAAGTCGAGTCAAAA-ACGGATTAATACGAAATAAA--TAACTA-CTAA
DroSec_CAF1_left   AATGACAAATCTAAAAAATCAAATACTGG-CGGAGTAACGATAGGAGTTCAAATATATATATGTA--AGATTGTTTATTA--TTATTA-ATTT
DroSim_CAF1_left   AATGACAAATCTAAAAAATCAAATACTGG-CGGAGTAACGAAG-GAGTTCAAGTATAA-TACGAA--ATAAATAACTACTAAAGTAAC-CGCT
DroWil_CAF1_left   GAAT-CGACTCGAACAGAAATCTTTCGGC-AGGAATTACTCAT-TCTATCGCATCGAAT-TAATCATACATTATCCTATA--TTATGA-GTTT
DroYak_CAF1_left   AATGACAAA-TCTAAAAAACGAATAATGG-CGGAGTAAGGATAAAAGTTCAACTTAAAA-AATGATTACGAGGAAATACA--TAACTT-GTAA
DroAna_CAF1_left   AATCGAATG-TGTCACAATGAGAGACGACGCGGTCGTAAAACAATGAATCGAATAACCCAACAAA--CTAAACAGTAATT--AAACCG-ATAA