CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroSec_CAF1_left   TTTT-TTGTATCAGTTGGTTCATAGCTGGACGCTGTTAT-GCTATTATCTCAAAAACT---GAATTTTTATGAATTTCTACCGAAATGTCCTTTTCAAATTTAAGTTGTACATTGATAGA
DroSim_CAF1_left   TATC-TCAAAAG-CTGTGAATAATTTGTTTTTATGAATTTTTACCGAAATGTCCTTTT---CAATTGCTTATTTTACATACCTTCTTGAGTCCTATAAATTTAGGTTGTACATAGATAGA
DroMel_CAF1_left   TTATTTCAAAA-ACTGTGCATAATT--TATTAATGCACTTTTCCCGAAATTTCCCTAAAGATAAATGAAATCATGTTCGAAG-ACAAAA-AGAGTCAAGTAAA---ATTTCATTACTAGA

DroSec_CAF1_left   TTTTGTAATACCA----ATTTGTTACAATGTATTTCTTATGGCCCAGCTACCGAAGTCGCCGGGCACAACAAAAAG-TTTTTTTAGACTCATTAGAGTGTTCCTCTCCACGGAAATCTTT
DroSim_CAF1_left   TTTTGTAATACTAAAAAATTTCTTGTAATGTATTTCTTATGGCCCAGCTACCGAAGTCGCCGGGCACATCAAAAAAATTTTTTTAGACTCATTAGAGTGTTCCTCTCCACGGAAATCTTT
DroMel_CAF1_left   TTTTGTAATACTAAAAAATTTGTTTCAATGCATTTCTTATGGCCCAGTTACCAAAGTCGCCGGGCACTACAAAATA-ATATTTTAGACTCATTAGAGTGTTCCTCTCCACGGAAATCTTT

DroSec_CAF1_left   AGTAAAAGGCGAAAGATTTATTCGACAATTGAAGAGAAACCAGAGTGACTTTACATAGGAAAATATCTGCCGTACCACTTAGAAAGTGCTTGAACATGTTGGGAATCATAATGT
DroSim_CAF1_left   AGTAAAAGGCGAAAGATTTATTCGACAATTGAAGAGAAACCAGAGTGACTTTATATAGGAAATTATCTGCCGTACCATTTAGAAAGTGCTTGAACATGTTGGGAATCATAATGT
DroMel_CAF1_left   AGTAAAAGGCGAAAGATTTATTCGACAATTGAAGAGAAACCAGAGTGACTTTAAATCGGAAATTCTTTGCCGTACCACTAAGAAATTGCTTGAACGTGTTGGGAATCATAATGT