CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroSec_CAF1_left   TTA-TGGTGAATTATTTCAT-TG-ATATGCTAA-TATATTATAAG-GGATAAGATTATCATGGAGAT----TTTTGAGTAAAAAAGTTATTCGCAACACTGGCAAGAAAACGCATAATTG
DroYak_CAF1_left   ATAAAAAGGGGTGAAATATTTTGAAGCTTAAAATCAGCCCAGAAT-ATAAAAGAAAGTGTTGGAAA-----TTTAATGTTGTTAA-CAACATTTTCCACAA-CAC-TAAAGGGATAAGGG
DroMel_CAF1_left   GTCAAAC---ATTATTACAT-TG-ATATGCTTA-TATGTTGTAATAAGGGAAGTAAGAAAAGGGTATTATTTTTTTAAAGACCAA-TCTT---AAGCTCAC--GC-AAAAAGGACGAATA

DroSec_CAF1_left   AACCTTGCCAGGTGTGCGCTTCTGCCAGGTGTGGTATTCCAACCCACGCTCTCTTTCGAGAACCAGAGCTTAAATCTGGCGCCTTAGACCGCTCGGCCAACCTGGCTATGAAAAATCTCA
DroYak_CAF1_left   GAACCACCCA-----CCTACCTTGCCAGGTGTGGGGTTCGAACCCACGCTCTCTCACGAGAACCAGGGCTTAAATCTGGCGCCTTAGACCGCTCGGCCAACCTGGCTACAAAGAAAGAAA
DroMel_CAF1_left   AA-TTATTAA-----CCTCGAATGCCAGGTGTGGGACTCGAACCCACGCTCTCTCTCGAGAACCAGAGCTTAAATCTGGCGCCTTAGACCGCTCGGCCAACCTGGCTGTGAAATATCTAA

DroSec_CAF1_left   CTTTCAAATTAGCATTTGGATGCTTGATTAGCTAAGCTCCTAAGGTCCTTTATGGCAGTACATAGTTGCAATATGCTAAATATTT---TGTATATTTGTAGTAAGC--TTTCACA----T
DroYak_CAF1_left   CTTTCACAGTTACATTTAGATGCTTGATTGGCAAAA----TGAGGTCCTTTATGAAAGTA-AAAGTTGCAACAGGCTGAATACTTTCATATTTGTAGTAAGCTTTCACATTTCTA----T
DroMel_CAF1_left   CTTTAAAATTAGCATTTGAATGCTTGATTAGCTAAG----CTAGGTCCTTTGTGGCAGTACATAGTTGCAACAAGCTGAATATTT---TGTATATATGTAGTAAGA--TTTCACATTTTA

DroSec_CAF1_left   T
DroYak_CAF1_left   G
DroMel_CAF1_left   A