CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   T--AGGAACAGCAAACCGGATTGAAAATACCTAATCGTGCAGTATAT-ATGT-TAA--TATGTATAT-AGGATTATTTTGGAGAAATTTAAAATATTT-----TTTGTAA-TAAAAGTAT
DroMel_CAF1_left   AGAAGTTACATAAGAAAAAATCAAAC---TTGTTCAAAATAACAGATTAATATGCA--AT-ATTTGTAAGTGAATGTGACTATTTTTAAAAAATTAAA-----ACGTAGTT--AAATTAT
DroSec_CAF1_left   C-AAGTTACATTAGAGAAAACCAAAC---GTGTTCAAAATAACAGATTTATGTGCA--AT-ATTTGTAAGTGAATT-CTACTGTTTTAAAAAAATAAA-----ATATGTAGTTAAATTTT
DroSim_CAF1_left   C-AAGTTACATTAGAGAAAACCAAAC---GTGTTCAAAATAACCGATTTATGTGTA--AT-ATTTGTAAGTAAATT-CGACTGTTTTTAAAAAATAAA-----ATATGTAGTTACATTTT
DroYak_CAF1_left   T--TTCAAT--TCGAGAAAGCCAAAA---GCATTAAAAA---CACCGGGTTATGCAATAT-TTATGTAAGTGTATT-GGAATATTTTCGAAAAATTAAAAACTCTTGTAA-AAAAATTAT

DroEre_CAF1_left   GGAACTTAAAAAAAAGTCGTATGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTCATATT-TCGTTGCGTCAAAATTTCC
DroMel_CAF1_left   GGTA---TAAAAAATGTATTTTGCATCGGCCGGGAATCGAACCCAGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTCTTTATTTCT-TGCGTCAGCATTTTC
DroSec_CAF1_left   GGTATT-TAAAAAATGTAGTATGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTTTTAGT-TTT-TTCGTCAAAATTTCC
DroSim_CAF1_left   GGTATT-TAAAAAATATAGTATGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTCTTAGT-TTT-TGCGTCAAAATTTCC
DroYak_CAF1_left   GGGA---ATTAAAAAATCGTTTGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTCTTATT-TTCTTTGGTCAAAATTACC

DroEre_CAF1_left   AAATAAAAGCGACAACTGGGTTTACGATTTTCCCAAATCCTAAAAGAAAATAAA-AATATAAGCATGCATCGACCGGGAATCGAACC-CGGACCACCC---GC-GT-GGGAGGCGGGCAT
DroMel_CAF1_left   CAATAATAATAACTGGC-CATTTAGTTTTTCCATCGATGCCGAATCGTCGTGCCAATAAAAAATTGG-CAA-ACATAAACGCCCTCC-TTCC-TCTACG--AT-CA-TAAGGAT-CATTA
DroSec_CAF1_left   CAACAATAATAGCTCTATGATCATTGTGATCCTTATCATTGTGATTAGAACTCCTTTATTTGATAGA-TGT-CTTAAAATTTAATCC-TGAG-TTAATAAAAT-CC-TAAAGTA-C---A
DroSim_CAF1_left   CAACTATAATAGCTCTATGATCATTAGGATCCTTAT---TGTTATTGTAACTCCTTTATTTGATAGG-AGG-TTTTAAATATTATCC-TGAG-TTAATAAAAT-CC-TAAAGTA-CAATG
DroYak_CAF1_left   GAACATAAACTACAACAACGGCTTTATGATTTTTCTTAATCTTTTAACAAAAAGGAAAATATAAACA-TGC-ATCGACCGGGAATCGAACCC-GGATCACCCGCGTGGG---AG-GCGGG

DroEre_CAF1_left   T
DroMel_CAF1_left   T
DroSec_CAF1_left   A
DroSim_CAF1_left   C
DroYak_CAF1_left   C