CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   ACTGTGTTGACAAGTAGATCCTTTTGATTTTATAATAGTTAAATATTTATTATTCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGCCAACCCGCGACAGAGGTGGAGCAAGCC
DroSec_CAF1_left   GACAAATAAATCTTTTGACTTTAGTTTTTAGTCATTTGTTAAATATTTATTATTCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGCCAACCCGCGACAGAGGTGGAGCAAGCT
DroSim_CAF1_left   TACTCTATTGACAAATAAATCTTTTGACTTTACATTAGTTAAATATTTATTATTCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGCCAACCCGCGACAGAGGTGGAGCAAGCT
DroEre_CAF1_left   AGTAGATCTTGGAACTAGTCAATTCTAAAATACTATACTTGACTATTTATTATCCAGTTGGGCCGAAATCCCGGCGGTACTGCAATACCGGGCCAACCCGCGACAGAGGTGGAGCAAGCT

DroMel_CAF1_left   CCTAGCACTCCGTCTGATTCCAAAAATCAGTTTAACATTTGTTGTCCTCCAATGGAGGAACTATCAGATGTTAAGCTGATAAGAACAGATACTACACTTTGATCTTAGCCATAAGGCCGA
DroSec_CAF1_left   CCTAGCACTCCGTCTGATTCCAAAAATCAGTTTAACATTTGTTGTCCTCCAATGGAGGAACTATCAGATGTTAAGCTGATAAGAACAGATACTACACTTTGATCTTAGCCATAAGGCCGA
DroSim_CAF1_left   CCTAGCACTCCGTCTGATTCCAAAAATCAGTTTAACATTTGTTGTCCTCCAATGGAGGAACTATCAGATGTTAAGCTGATAAGAACAGATACTACACTTTGATCTTAGCCATAAGGCCGA
DroEre_CAF1_left   CCTAGCACTCCGTCTGATTCCAAAAATCAGTTTAACATTTGTTGTCCTCCAATGGAGGAACTATCAGATGTTAAGCTGATAAGAACAGATACTACACTTTGATCTTAGCCATAAGGCCGA

DroMel_CAF1_left   GAAGCGATAACTTGAAACGGAAAACGAAAAGGGTCTCCATGAGCAAACGGCCAGAAGCAGTTGGGAATTGTAG
DroSec_CAF1_left   GAAGCGATAACTTGAAACGAAAAACGAACAGGGTCTCTGTGAGCAAACGGCCAGAACCAATTGGGAATTATAG
DroSim_CAF1_left   GAAGCGATAACTTGAAACTGAAAACGAACAGGGTCTCGGTGAGCGAACAGCCAGAACCAGTTGGGAATTATAG
DroEre_CAF1_left   GAAGCGATAACTTGTAAGGGAAAACGAACCGGGTCTCCATGAGCAACCGGCCAGAACCAGTTGGGAATTATAG