CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   TATCTAAAGAGGACCCCACAATTTGAAAAGGAAGGAACGTTCCTCATCGGTAGAAATATACT-TTCGGGGGTCATTTATTCATTC-TATCAAT--GTAGTTGCAAGGCA-GGCTAC-ATA
DroSec_CAF1_left   ATACAATTTGGCACAAAGTTAACGGACGACACCAATCCGTAAAGTC-ATCGCAAATGTGTGGGGACTCCGGCGGACTCAACTCAA-ACACATTAGAAGGAG--CGCGCCTCTCCTT--AT
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNN--NNNNNNNNNNNNNN-NNNNNN-NNN
DroYak_CAF1_left   ACATTATGCAGATATATCACAATATACCAAAAAAAAAACAATTTGTAGAATCCAAACTTAGT-CTAACGCAGAGGACCTTTTCCTGGCGCCTC--ATAAAT-ACAATA--ATTAATATAA

DroMel_CAF1_left   TATGAAAATAATGATACTTTTAAAATTTATTGCAGATGTCGGGACGGCGCGAACGCCATTCCCGGCTACCAAAAATTACACGCACGAGTTATTCACATTAGGAATAATCGCAGAGGTCAA
DroSec_CAF1_left   AAAATTATTTAAAATAATATTAAAATTTATTGCAAATGTCGGGACGGCGCGAACGCCATTCCCGGCTACCAAAAATTACACGCACGAGTTATTCACATTAGGAATAATCGCAGAGGTCAA
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNATTTATTGCAAATGTCGGGACGGCGCGAACGCCATTCCCGGCTACCAAAAATTACACGCACGAGTTATTCACATTAGGAATAATCGCAGAGGTCAA
DroYak_CAF1_left   TTGAGACCTTAGAGCTACTTTTAAATTTATTTTTTATGTCGGGACGGCGCGAACGCCATTCCCGGCTACCAAAAATTACACGCACGAGTTATTCACATTAGGAATAATCGCAGAGGTCAA

DroMel_CAF1_left   CTCAGCCGAGGTGCAATGGCCAAGCCTCACTCCGGAGGAACCGCCTTCGTGATCACGGTTAACCTCTACGCCAGGTAAGTATGCTTTCCTCAGCTCAGGGAATGGGTTTCCATGAGCTGA
DroSec_CAF1_left   CTCAGCCGAGGTGCAATGGCCAAGCCTCACTCCGGAGGAACCGCCTTCATGATCACGGTTAACCTCTACGCCAGGTAAGTATGCCTTCCTCCTCTCAGGGGATGGGTTTCCATGAGCTGG
DroSim_CAF1_left   CTCAGCCGAAGTGCAATGGCCAAGCCTCACTCCGGAGGAACCGCCTTCATGATCACGGTTAACCTCTACGCCAGGTAAGTATGCTTTCCTCCGCTCAGGGGATGGGTTTCCATGAGCTGG
DroYak_CAF1_left   CTCAGCCGAGGTGCAATGGCCAAGCCTCACTCCGGAGGAACCGCCTTCGTGATCACGGTTAACCTCTACGCCAGGTAAGTATGCCTTGCTCCGCTCCGGGGATGGGTTTCCATGCGGCGA

DroMel_CAF1_left   TGGCCAGAAGCAGTTGG
DroSec_CAF1_left   TGGCCAGAAGCAGTTGG
DroSim_CAF1_left   TGGCCAGAAGCAGTTGG
DroYak_CAF1_left   TGGCCAGAAGCAGTTGG