CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   AG-AAATATAGAAATCCACAATATA-TATTTTTGGATCAAAAA-ATTTAACCGACCGATATAATTTCTAGTTTTCGTCGCCCTTTAGTTTATATAAGCATAGTGATAGAATAAACCACAT
DroYak_CAF1_left   TA-AGCCGATTGAAATATTATTTTTCCATATAATAATTCTATT-TCTGGATCAACGGATATCTTTTCTGATTATCGTCTC-TTTAAGTTGATATCAGCATTTTGACGGCTTGCGCAACAT
DroSim_CAF1_left   AAGAAATGTAGAAATCCACAAA-TA-TATT-TTTAGGTCAAAAAATGTAACCGACCGATATATTTACTGGTTTTCGTCCCCCTTTAGTTTATGCAAGCTCATTGACGGCATGGGCAACAT

DroMel_CAF1_left   GCCCCAGTGGCCTAATGGATAAGGCATCGGCCTCCTAAGCCGGGGATTGTGGGTTCGAGTCCCATCTGGGGTAAGAGTTGTATCCTTTTTTTTTATTTCTTAAACTTTGAAGCCTAGAAA
DroYak_CAF1_left   GCCCCAGTGGCCTAATGGATAAGGCATCGGCCTCCTAAGCCGGGGATTGTGGGTTCGAGTCCCATCTGGGGTAA-AGTTGCAATCTTTTTTTATTTAACTGA-ACTTCCTTTTTATAACC
DroSim_CAF1_left   GCCCCAGTGGCCTAATGGATAAGGCATCGGCCTCCTAAGCCGGGGATTGTGGGTTCGAGTCCCATCTGGGGTAA--GACGTATCCTTTATTTTTATTTTTTGCATCTTGGAT---A-AAA

DroMel_CAF1_left   TCTGCATCCGAAAAAAGGTGCATCC-G-AACGAGTTTCCAGCCAAAA-CCCG--TTACATTCCCTCGCTAATTAAAAAGGAGTGGTT
DroYak_CAF1_left   CTTGCTAGTGAAAAAACAGTATTCGAT-TTCTTATATTTATTAAAAT-TTAA--AGCCTAAAAGTCTGCATCGTGA-TGAAATCTGC
DroSim_CAF1_left   GCTGCATACGATCGAGCTTCCAACC-AAAACGCGTTACTTAACATGGTCCCTTGCTAATTAAAAACGAGTGTTCGATTTCTTATATT