CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   A---GATATGAAACAGTTAAA-GTGAGAAACTTGTGCAGAT-AGCAC-AAGAAATTAATAATAAATATTTATTTAAACTTGAATTGAGATCA--A--ACTATACGGCGTAATATTTT---
DroMel_CAF1_left   CTGTGTACGTAGAGAGTGAAA-AACTAATCGAGTTGTAAACAAACAG-CACACATGTATCTATTATTATTATAATAATTTAACCAGTTTCTGAGAGGAAAAAATAGAGAATAGAATA---
DroYak_CAF1_left   TCATAA-----AATTTTGATG-GAGAAGG-ACTTATTA-ACACGTTA-AGTTCTGATA-TTGCACACCATAAGTTCAGCTATACGTGGTAAA--ATTATAAATAAACGTTAAATATTT--
DroSec_CAF1_left   AGG---GTG--TTTTGTGTACGTGGAGAATGAAAGAATGAACT-ACT-TGTAAACAAACAGCACACAA-AATAATAATTATTATAATAATTT--AACCATTTCCTCAGAAATGCTTAGTA
DroSim_CAF1_left   TAC---TTG--GAGAATGAAA-AATATAACTACTTGTAAACAA-ACAGCACACATATGTTTATTATTT-TATAATAATTATTATAATAGTTT--AACCATTTCCTCAGAAATG----GTA

DroEre_CAF1_left   -----TATAATTAA-AAATTCAAAAAATAATTG-TATCTCTATCGCAGTCGGTAGGATTCGAACCTACGCTCCCAGAGGGAATCTGATTTCTAGTCAGACGCCTTAACCGCTCGGCCACG
DroMel_CAF1_left   -----GAGAATGTTGAAAAATAAAGAAAATCCGTAAACCTTCTCGCAGTCGGTAGGATTCGAACCTACGCTCCCAGAGGGAATCTGATTTCTAGTCAGACGCCTTAACCGCTCGGCCACG
DroYak_CAF1_left   -----CTTATAAGT-AAAAGTAAAAAAGAATTT-TACTTCTCTCGCAGTCGGTAGGATTCGAACCTACGCTCCCAGAGGGAATCTGATTTCTAGTCAGACGCCTTAACCGCTCGGCCACG
DroSec_CAF1_left   TAGTCGAGAATGTTAAAAA--ATAAAAAATTTG-TAACTTTCTCGCAGTCGGTAGGATTCGAACCTACGCTCCCAGAGGGAATCTGATTTCTAGTCAGACGCCTTAACCGCTCGGCCACG
DroSim_CAF1_left   TAGTCGAGAATGTTAAAAA--ATAAAAAATTTG-TAACTTTCTCGCAGTCGGTAGGATTCGAACCTACGCTCCCAGAGGGAATCTGATTTCTAGTCAGACGCCTTAACCGCTCGGCCACG

DroEre_CAF1_left   ACTGCTGTTGGTTGAGTTGGGCAAATCGGCAACTAATCTCGATTGCATGG-AGAGTGAACGACTGTGAGCACACATTACTGTACTTCGCG---CATTTAACAACACTG-CA-TG
DroMel_CAF1_left   ACTGCTGTTGGTATGACTCGGCAAATTGGCAACTAATGTTGATTGCATGGGAGAATCCAAGACTG--AACACACATTTCGGAACCTTGCT---CATTTGACAACACTGCAT-GT
DroYak_CAF1_left   ACTGCTGTTGGTTTACTTGGGCAAACTGGCAACTAATGTCGATTGCATGG-AGAGCGAAAGACTGTGGGCAT--TTTATAACACTGCATGGGTGTTATT---TGAATTTAAGCG
DroSec_CAF1_left   ACTGCTGTTGGTTTGTTTAGGCAAACTGGCAACTAATTTTGATAGCAGGG-AGAATGAAACACTGTGAGCACACATTTCGGAATCTTGCG---GATTTGACAACACTGCA--TG
DroSim_CAF1_left   ACTGCTGTTGGTTTCTTTGGGCAAACTGGCAACTAATTTTGATTGCATGG-AGAATCAAACACTGTGAGCACACATTTCGGAATCTTGCG---GATTTGACAACACTGCA--TG