LocARNA::SequenceAnnotation Member List

This is the complete list of members for LocARNA::SequenceAnnotation, including all inherited members.

annotation_string(size_t i) const	LocARNA::SequenceAnnotation	[inline]
clashing_names(const AlignmentEdges &edges, const SequenceAnnotation &annotationA, const SequenceAnnotation &annotationB) (defined in LocARNA::SequenceAnnotation)	LocARNA::SequenceAnnotation	[static]
duplicate_names() const (defined in LocARNA::SequenceAnnotation)	LocARNA::SequenceAnnotation
empty() const	LocARNA::SequenceAnnotation	[inline]
empty_instance()	LocARNA::SequenceAnnotation	[inline, static]
is_neutral(const name_t &name)	LocARNA::SequenceAnnotation	[static]
is_neutral_char(char c)	LocARNA::SequenceAnnotation	[inline, static]
is_neutral_pos(size_t i) const	LocARNA::SequenceAnnotation
length() const	LocARNA::SequenceAnnotation	[inline]
name(size_t i) const	LocARNA::SequenceAnnotation
name_length() const	LocARNA::SequenceAnnotation	[inline]
push_back_name(const name_t &name)	LocARNA::SequenceAnnotation
SequenceAnnotation(size_type name_length=0)	LocARNA::SequenceAnnotation	[inline, explicit]
SequenceAnnotation(const std::string &annotation_string)	LocARNA::SequenceAnnotation	[explicit]
SequenceAnnotation(const std::vector< std::string > &annotation_strings)	LocARNA::SequenceAnnotation	[explicit]
SequenceAnnotation(const AlignmentEdges &edges, const SequenceAnnotation &annotationA, const SequenceAnnotation &annotationB)	LocARNA::SequenceAnnotation
single_string(char sep= '#') const	LocARNA::SequenceAnnotation