LocARNA::ScoringParams Member List

This is the complete list of members for LocARNA::ScoringParams, including all inherited members.

alpha_factor	LocARNA::ScoringParams
basematch	LocARNA::ScoringParams
basemismatch	LocARNA::ScoringParams
beta_factor	LocARNA::ScoringParams
exclusion	LocARNA::ScoringParams
exp_probA (defined in LocARNA::ScoringParams)	LocARNA::ScoringParams
exp_probB (defined in LocARNA::ScoringParams)	LocARNA::ScoringParams
gamma_factor	LocARNA::ScoringParams
indel	LocARNA::ScoringParams
indel_loop	LocARNA::ScoringParams
indel_opening	LocARNA::ScoringParams
indel_opening_loop	LocARNA::ScoringParams
mea_scoring	LocARNA::ScoringParams
new_stacking	LocARNA::ScoringParams
probability_scale	LocARNA::ScoringParams
ribofit	LocARNA::ScoringParams
ribosum	LocARNA::ScoringParams
ScoringParams(score_t basematch_, score_t basemismatch_, score_t indel_, score_t indel_loop_, score_t indel_opening_, score_t indel_opening_loop_, RibosumFreq *ribosum_, Ribofit *ribofit_, score_t unpaired_penalty_, score_t struct_weight_, score_t tau_factor_, score_t exclusion_, double exp_probA_, double exp_probB_, double temp_, bool stacking_, bool new_stacking_, bool mea_scoring_, score_t alpha_factor_, score_t beta_factor_, score_t gamma_factor_, score_t probability_scale_)	LocARNA::ScoringParams	[inline]
stacking	LocARNA::ScoringParams
struct_weight	LocARNA::ScoringParams
tau_factor	LocARNA::ScoringParams
temperature_alipf (defined in LocARNA::ScoringParams)	LocARNA::ScoringParams
unpaired_penalty	LocARNA::ScoringParams