LocARNA::RnaDataImpl Member List

This is the complete list of members for LocARNA::RnaDataImpl, including all inherited members.

arc_2_probs_	LocARNA::RnaDataImpl
arc_prob_matrix_t typedef	LocARNA::RnaDataImpl
arc_probs_	LocARNA::RnaDataImpl
consensus_probability(double pA, double pB, size_t sizeA, size_t sizeB, double p_expA, double p_expB, double p_penalty) const	LocARNA::RnaDataImpl
drop_worst_bps(size_t keep)	LocARNA::RnaDataImpl
has_stacking_	LocARNA::RnaDataImpl
init_as_consensus_dot_plot(const Alignment::edges_t &edges, const RnaData &rna_dataA, const RnaData &rna_dataB, double p_expA, double p_expB, double f_penalty, bool stacking)	LocARNA::RnaDataImpl
init_from_fixed_structure(const RnaStructure &structure, const PFoldParams &pfoldparams)	LocARNA::RnaDataImpl
init_from_rna_ensemble(const RnaEnsemble &rna_ensemble, const PFoldParams &pfoldparams)	LocARNA::RnaDataImpl
max_bp_span_ (defined in LocARNA::RnaDataImpl)	LocARNA::RnaDataImpl
p_bpcut_	LocARNA::RnaDataImpl
read_pp_arc_probabilities(std::istream &in)	LocARNA::RnaDataImpl
read_pp_sequence(std::istream &in)	LocARNA::RnaDataImpl
RnaDataImpl(RnaData *self, const RnaData &rna_dataA, const RnaData &rna_dataB, const Alignment::edges_t &alignment, double p_expA, double p_expB)	LocARNA::RnaDataImpl
RnaDataImpl(RnaData *self, double p_bpcut, size_t max_bp_span)	LocARNA::RnaDataImpl
self_	LocARNA::RnaDataImpl
sequence_	LocARNA::RnaDataImpl
write_pp_arc_probabilities(std::ostream &out, double p_outbpcut, bool stacking) const	LocARNA::RnaDataImpl
write_pp_sequence(std::ostream &out) const	LocARNA::RnaDataImpl