LocARNA::Ribosum Member List

This is the complete list of members for LocARNA::Ribosum, including all inherited members.

alphabet() const	LocARNA::Ribosum	[inline]
alphabet_type typedef	LocARNA::Ribosum	[protected]
am	LocARNA::Ribosum	[protected]
arcmatch_score(char i, char j, char k, char l) const	LocARNA::Ribosum	[inline]
arcname_alphabet	LocARNA::Ribosum	[protected]
basematch_score(char i, char j) const	LocARNA::Ribosum	[inline]
basename_alphabet	LocARNA::Ribosum	[protected]
bm	LocARNA::Ribosum	[protected]
char_basename_alphabet	LocARNA::Ribosum	[protected]
get_arcmatch_scores() const	LocARNA::Ribosum	[inline]
get_basematch_scores() const	LocARNA::Ribosum	[inline]
get_name() const	LocARNA::Ribosum	[inline]
make_char_alphabet() const	LocARNA::Ribosum	[protected]
matrix_t typedef	LocARNA::Ribosum
name	LocARNA::Ribosum	[protected]
operator<<(std::ostream &out, const Ribosum &ribosum)	LocARNA::Ribosum	[friend]
read_matrix(std::istream &in, matrix_t &mat, const alphabet_type &names) const	LocARNA::Ribosum	[protected]
read_ribosum(std::istream &in)	LocARNA::Ribosum	[protected]
Ribosum()	LocARNA::Ribosum	[protected]
Ribosum(const std::string &filename)	LocARNA::Ribosum	[explicit]
set_arcname_alphabet(const std::string a[])	LocARNA::Ribosum	[inline, protected]
set_basename_alphabet(const std::string a[])	LocARNA::Ribosum	[inline, protected]
string_alphabet() const	LocARNA::Ribosum	[inline]
write_matrix(std::ostream &out, const matrix_t &mat, const alphabet_type &alph) const	LocARNA::Ribosum	[protected]
~Ribosum()	LocARNA::Ribosum	[virtual]