LocARNA::ExtRnaDataImpl Member List

This is the complete list of members for LocARNA::ExtRnaDataImpl, including all inherited members.

arc_in_loop_probs_	LocARNA::ExtRnaDataImpl
arc_prob_matrix_matrix_t typedef	LocARNA::ExtRnaDataImpl
arc_prob_matrix_t typedef	LocARNA::ExtRnaDataImpl
arc_prob_vector_matrix_t typedef	LocARNA::ExtRnaDataImpl
arc_prob_vector_t typedef	LocARNA::ExtRnaDataImpl
drop_worst_bpil(size_t keep)	LocARNA::ExtRnaDataImpl
drop_worst_bpil_precise(double ratio)	LocARNA::ExtRnaDataImpl
drop_worst_bps(size_t keep)	LocARNA::ExtRnaDataImpl
drop_worst_uil(size_t keep)	LocARNA::ExtRnaDataImpl
ExtRnaDataImpl(ExtRnaData *self, double p_bpilcut, double p_uilcut)	LocARNA::ExtRnaDataImpl
has_in_loop_probs_	LocARNA::ExtRnaDataImpl
init_from_ext_rna_ensemble(const RnaEnsemble &rna_ensemble)	LocARNA::ExtRnaDataImpl
init_from_fixed_structure(const RnaStructure &structure)	LocARNA::ExtRnaDataImpl
p_bpilcut_	LocARNA::ExtRnaDataImpl
p_uilcut_	LocARNA::ExtRnaDataImpl
read_pp_in_loop_probabilities(std::istream &in)	LocARNA::ExtRnaDataImpl
read_pp_in_loop_probabilities_kwline(const std::string &line)	LocARNA::ExtRnaDataImpl
read_pp_in_loop_probabilities_line(const std::string &line)	LocARNA::ExtRnaDataImpl
self_	LocARNA::ExtRnaDataImpl
unpaired_in_loop_probs_	LocARNA::ExtRnaDataImpl
write_pp_basepair_in_loop_probabilities(std::ostream &out, const arc_prob_matrix_t &probs, double p_cut) const	LocARNA::ExtRnaDataImpl
write_pp_in_loop_probabilities(std::ostream &out, double p_outbpcut, double p_outbpilcut, double p_outuilcut) const	LocARNA::ExtRnaDataImpl
write_pp_in_loop_probability_line(std::ostream &out, size_t i, size_t j, double p_bpcut, double p_ucut) const	LocARNA::ExtRnaDataImpl
write_pp_unpaired_in_loop_probabilities(std::ostream &out, const arc_prob_vector_t &probs, double p_cut) const	LocARNA::ExtRnaDataImpl