LocARNA::ExactMatcher Member List

This is the complete list of members for LocARNA::ExactMatcher, including all inherited members.

compute_arcmatch_score()	LocARNA::ExactMatcher
ExactMatcher(const Sequence &seqA_, const Sequence &seqB_, const RnaData &rna_dataA_, const RnaData &rna_dataB_, const ArcMatches &arc_matches_, const SparseTraceController &sparse_trace_controller_, PatternPairMap &foundEPMs_, int alpha_1_, int alpha_2_, int alpha_3_, score_t difference_to_opt_score_, score_t min_score_, long int max_number_of_EPMs_, bool inexact_struct_match_, score_t struct_mismatch_score_, bool apply_filter_, bool verbose_)	LocARNA::ExactMatcher
test_arcmatch_score()	LocARNA::ExactMatcher
trace_EPMs(bool suboptimal)	LocARNA::ExactMatcher
~ExactMatcher() (defined in LocARNA::ExactMatcher)	LocARNA::ExactMatcher