LocARNA-1.9.2
 All Classes Files Functions Variables Typedefs Enumerations Enumerator Friends
Public Member Functions
LocARNA::BasePairFilter::Canonical Class Reference

base pair filter to allow only canonical base pairs More...

#include <base_pair_filter.hh>

Inheritance diagram for LocARNA::BasePairFilter::Canonical:
LocARNA::BasePairFilter::Filter

List of all members.

Public Member Functions

 Canonical (const std::string &sequence)
 constructor
 ~Canonical ()
 d'tor
bool operator() (size_t i, size_t j) const
 check for canonical base pair

Detailed Description

base pair filter to allow only canonical base pairs


Constructor & Destructor Documentation

LocARNA::BasePairFilter::Canonical::Canonical ( const std::string &  sequence) [inline, explicit]

constructor

Parameters:
sequencerna sequence

Member Function Documentation

bool LocARNA::BasePairFilter::Canonical::operator() ( size_t  i,
size_t  j 
) const [inline, virtual]

check for canonical base pair

Parameters:
ileft end
jright end
Returns:
whether (i,j) forms a canonical basepair in the object's sequence

Reimplemented from LocARNA::BasePairFilter::Filter.


The documentation for this class was generated from the following file:
 All Classes Files Functions Variables Typedefs Enumerations Enumerator Friends