Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination
by Sebastian Will, Anke Busch, and Rolf Backofen
accepted by Constraints Journal, 2007.
It implements the inference-based constraint solving technique Cluster Tree Elimination for the solving of sequence alignment with side constraints.
CTE-Alignment is written by Sebastian Will, Copyright 2006-2007. Its released under GPL.
CTE-Alignment should run on recent Linux systems. Installation under Linux/Unix follows the usual scheme:
tar xzf cte-alignment-0.8.tar.gz
Currently, please DO NOT install the program by