Reference sequence (1): Chyd1_A_G_3_X_F2
Identities normalised by aligned length.
Colored by: consensus/70% and property
                             1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :   ] 254
 1 Chyd1_A_G_3_X_F2 100.0%     gacgtattatgacttttgtatttaccaattgctgtcgacctgtaatccccccaaaaacccccggggatcgacagcaaaaggta--aattctggtatgtgttgactttcaagagcttgtg-----------------------------------------------------gagtataatagaaataacatacagcagcttgaaaacttaaccatttgttccttgtaagatttctcaagccatctacgg----    
 2 Csac_A_G_3_X_F2   97.4%     gatgtattttgacttttgcatttaccaattgctgtcgacctgtaatccccccaaaaacccccggggatcgacagcaaaaggta--atttctggtatgtgttgactttcaagagcttgtg-----------------------------------------------------gagtataatagaaataacctacagcagcttgaaaacttaaccatttgttccttgtaagatttctcaagccatctacgg----    
 3 Cbes_A_G_4_X_F2   91.3%     ggcgtattatgacttttgtatttaccaattgctgtcgacctgcagtacccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcaagagcttgtg-----------------------------------------------------gtgtataatagaaacaacatactgcagcttgaaaacttaaccatttgttccttgttgcattctgcaagctatccacgg----    
 4 Cbes_A_G_5_X_F2   89.7%     aataaattatgacttttgtatttaccaattgctgtcgacctgcagtacccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcaagagcttgtg-----------------------------------------------------gtgtataatagaaacaacatactgcagcttgaaaacttaaccatttgttccttgttgcattctgcaagctatccacgg----    
 5 Ckro_A_G_2_X_F2   87.2%     tattaattaaaacttttgtatttaccaattgctgtcgacctgaaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcatgcttttgag-----------------------------------------------------gtgtataatagaaacaacatactgcagcttgaaaacttaaccatttgttccttgtggcatttttcaacctatccacggg---    
 6 Ckro_A_G_5_X_F2   88.7%     aataaattttgacttttgtatttaccaattgctgtcgacctgaaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcatgcttttgag-----------------------------------------------------gtgtataatagaaataacatactgcagcttgaaaacttaaccatttgttccttgtggcatttttcaacctatccacgg----    
 7 Ckro_A_G_3_X_F2   90.8%     gacgtattatgacttttgtatttaccaattgctgtcgacctgaaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcatgcttttgag-----------------------------------------------------gtgtataatagaaataacatactgcagcttgaaaacttaaccatttgttccttgtggcattcttcaacctatccacgg----    
 8 Ckro_A_G_4_X_F2   83.1%     tttactacgctgattttgtagtttccaattgctgtcgacctgaaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcatgcttttgag-----------------------------------------------------gtgtataatagaaataacatactacagcttgaaaacttaaccatttgttccttgtgacattcttcaacctatccacgg----    
 9 Ckri_A_G_6_X_F2   85.7%     agccaattctttattttgcatttaccaattgctgtcgacctgtaatcctcccaaaaacccccgggggtcgacagcaaaaggta--atttctgacatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctatagcagcttgaaaacttaaccatttgttccttgcggctttcttcaaactatctacggg---    
10 Clac_A_G_5_X_F2   87.7%     agccaattctttattttgtatttaccaattgctgtcgacctgtaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggcatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacccatagcagcttgaaaacttaaccatttgttccttgcggcttttttcaacctatctacgg----    
11 Ckri_A_G_5_X_F2   87.8%     tacatatatcagtttttgtatttaccaattgctgtcgacctgtaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctgacatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctacagcagcttgaaaacttaaccatttgttccttgcggcttttcccaaactatctacggg---    
12 Clac_A_G_2_X_F2   88.7%     tacatatttaaacttttgtattttccaattgctgtcgacctgcaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctgacatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctatagcagcttgaaaacttaaccatttgttccttgcggcttttctcaaactatctacgg----    
13 Ckri_A_G_4_X_F2   87.2%     gacatatttaaacttttgtattttccaattgctgtcgacctgcaatcccaccaaaaacccccgggggtcgacagcaaaaggta--atttctgacatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctatagcagcttgaaaacttaaccatttgttccttgcggctttcttcaaattatctacgg----    
14 Ckri_A_G_7_X_F2   87.7%     atacttaatttaactttgtatttaccaattgctgtcgacctgtaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggcatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctacagcagcttgaaaacttaaccatttgttccttgcggcttttctcaaactatctacgg----    
15 Ckri_A_G_8_X_F2   84.3%     agttctttagtgattttgtatttaccaattgctgtcgacctgtaat-cccccaaaaacccccgggggtcgacagcaaaaggta--ttttctggcatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataatctatagcagcttgaaaacttaaccatttgttcctttcggcttttttcaacctatctacgggg--    
16 Clac_A_G_8_X_F2   85.2%     agttttttagtgattttgtattttccaactgctgtcgacctgtaatccccccaaaaacccccgggggtcgacagcaaaaggta--ttttctggcatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctatagcagcttgaaaacataaccatttgttccttgtggctttcttcaaactatctacggg---    
17 Ckro_A_G_8_X_F2   87.7%     aggcataattagcttttgtacttaccaattgccgtcgacctgcaatccccctaaaaacccccggggatcgacagcaaaaggta--atttctggtatgtgttgactttcaaaagtttgtg-----------------------------------------------------gagtataatagaaataacatactgcagcttgaaaacttaaccatttgttccttgtggcatttttcaagccttctacgg----    
18 Chyd1_A_G_4_X_F2  86.7%     ggcataatttagcttttgtatttaccaattgttgtcgacctgcaatccccccaaaaacccccgggggtcgacagcaaaaggaa--gtttttggcatcccttgactttcaaaagctttag-----------------------------------------------------gggtataatagaaataacctacagcagtttgaaaacttaaccatttgttccttgtgatatttttcaagccatctacgg----    
19 Cbes_A_G_7_X_F2   83.1%     gacttaaattagcttttgtatttaccaattcctgtcgacctgcaatccccccaaaaacccccgggggtcgacagcaaaagaca--aattttggcatgtattgacttgtgggcttttgag-----------------------------------------------------gtgtataatagaaacaacatactgcagcttgaaaacttaaccatttgttccttgttgcattctgcaagctatccacgg----    
20 Cowe_A_G_3_X_F2   81.5%     agttatttagcatttttgtattttccaattgctgtcgacctgcaatccccccgaaaacccccgggggtcgacagcaaaaggaa--tatattaccatgtgttgactttcaagagtttgtg-----------------------------------------------------gagtataatagaaataatctatagcagtttgaaacttcatccatttgttcctcataagactttacaagctctctacgg----    
21 Cobs_A_G_5_X_F2   76.4%     atgtactctgcatttttgtattttccaattgctgtcgacctgcaataccctcaaaaa-ccccgggggtcgacagcaattggaa--aattttaacacatcttgactttcttgagcttgtg-----------------------------------------------------gggtataatagaaataacttatagtagtttgaaacttcatccatttgttccccataagacttcccaagctccctacgg----    
22 Clac_A_G_10_X_F2  26.6%     tgattgtattcggtttcatgtttgtgggatgtggctttgaatggatttctggcagcagct----ggatagacggaaaggtttga-aaggcttcttttcttttatgcaactgggtttgtgttgattttgagtggatgtattaacataaaaacattgacaggggtgcataaagttgatataataaaatcaa-----------------------------------------gcttttcaacct------------    
23 Ckri_A_G_11_X_F2  27.0%     tgattgtattcggtttcatgtttgtgggatgtggctttgaatggatttctagcagcagct----ggatagacggaaaggtttga-aaggcttcttttatttgatgcaactgggtttgtgttgattttgagtggatgtattaaaataaaaacattgacaggggtgtataaagttgatataataaaatcaa-----------------------------------------gcttttcaacct------------    
24 Clac_A_G_9_X_F2   25.7%     ttattgtattcggtttcatgtttgtgggatgtggctttgaatggatttctggcagcagct----ggatagacggaaaggtttga-aaggcttcttttcttttatgcaactgggtttgtgttgattttgagggaatgtatcaaaataaaaacattgacaggggtgcataaagttgatataataaaatcag-----------------------------------------gctttttaaccg------------    
25 Clac_A_G_11_X_F2  25.7%     gatttgtattcggtttcatgtttttgggacgtggctttgaatggatttctggcagctgct----ggatagacggaaaggtttga-aaggcttcttttatttgatgcaactgggtttgtgttgatttctaaggggtgtatcaaaataaaaacattgacagaggtgcataaagttgacataataaaatcag-----------------------------------------gctttttaacct------------    
26 Ckri_A_G_2_X_F2   27.0%     tatttgtattcgatttcaagtttgcaggatgtgggtttgaatgtatttctggcagcaact----ggatagacgaaaaggcttga-aaggcttttcctatttgatgtagctgggtttgtgttgatattgaggtgatgtattaatataaaaacattgacagtggtgcataaagttgatataataaaatcaa-----------------------------------------gcttttcaacct------------    
27 Clac_A_G_6_X_F2   26.1%     --tttgtattcggtttcatgcttgcgggctgtgggtttgagctgatttttggaagcagat----ggatagacggaaagggttgagaaggttcttttcttttgatacaactgggtttgtgccggttttgagggcatgtattaaaataaaaacattgacagtggtgcataaagttgatataataaaatcaa-----------------------------------------gctttttgacggg-----------    
28 Csac_A_G_1_X_F2   29.5%     ggtttgtatacggtttcagatttgaagtacgtggttttgctttaatctctggcagcagct----ggatagacggaaagggttga-taggtttttatcgcttgactttccttagctgatattagttttccacagatgttttgatataaaaacattgacaggtgtgcataaagttgatataataaaatcaa-----------------------------------------gctcttcaacgt------------    
29 Cobs_A_G_10_X_F2  24.9%     atattgtattcggtttcgagcttgcagtacgtggacttgaccaaacttctggcatctgct----ggatagacggaaaggtttta-tggtcttttgtcccttgattcttctgggctgatttaaattttccacagatgttttaatataaaaatatttacagaggtatataatcttgatataataaaatcaa-----------------------------------------gctcttgaacgt------------    
30 Cobs_A_G_7_X_F2   24.5%     atattgtattcggtttcaagcctgcagtacgtagattagaccaaacttctggcagcagct----ggatagacggaaagatttta-tgggcttttatcccttgattcttctgggttgatttgagtttttcacaaatgttttaatataaaaacattgacaggggtgtataatcttgatataataaaatcaa-----------------------------------------gctcttgaacgt------------    
31 Csac_A_G_5_X_F2   24.5%     gatttgtatgcggtttcataaagatttgacatggtttttgcaaagtttctggcagcagct----ggatagacggaagactttga-ggtggctatatagcttgatttttctggcttgatgtgagttttccacagatgttttgatataaaaacattgacagggatgcataatcttgatataataaaatcaa-----------------------------------------gcttttttacgt------------    
32 Cobs_A_G_9_X_F2   24.5%     aatttggacacggtttcatttagatgtggtaagattttgagttgatttttggcagctgct----ggatagacggaaggattcaa-gagtgttttatcgcttgaatttactgaactgtgtgctgttttgatatgatgtactgatataaaaacattgacaccattgcataaagttgatataataaaatcaa-----------------------------------------gctttccaacgt------------    
33 Cobs_A_G_8_X_F2   23.7%     aatttggacacggtttcatttagatgtggtaagattttgagttgatttctggcagctgct----ggatagacggaggggttcga-gagtgttttatcccttgaattttctgaactgtgtgttattttgatatgatgtactgatataaaaacattgacaccattgcataaagttgatataataaaatcaa-----------------------------------------gctttccaacgt------------    
34 Cobs_A_G_6_X_F2   22.8%     attttgtactcggtttcagtacctataccacagactttgaaataattgctggcagtagct----ggatagacggaaagaataga-tgagactttagagcttgatttttctgaactgtgcaggattttgatatgatgtactgatataaaaacattgacaccattgcataaagttgatataataaaatcaa-----------------------------------------gctttccaacgt------------    
35 Ckri_A_G_1_X_F2   27.6%     acaaaggagatacttgctaaatcaaacagaaaaggtttagttcagtatttttgagag--------------------------caacttcctaaatatattgttcatgatgaaatatta--------------------------aaagatattgtccaaaaattaaatagtgaagatgat------gatttgtagccccctgtggagatagaaacttaattttctttgcattttttaatataaatgccatttt    
   consensus/90%               sssssssssssusTTTsusussssssssssussGsssssssssuuTsssssssAusssCs....GGuTsGACuGsAuuusssu..sssssTssssTsssTTGAsssssssGsssTssss.....................................................ssuTATAATAuAAssAA.........................................ssTssssAAsss............    

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