Reference sequence (1): Shyg_0F_P_1_M1_F1 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 [ . . . . : . . . . 1 . . . . : . ] 164 1 Shyg_0F_P_1_M1_F1 100.0% ----------cccatatgcgcagtacgccggaataattgaaagtcatagaaacacagacttccaagcgc-----------------------------catacccgcaggccatcgag---------------------------------------------- 2 Shyg_B_P_2_M1_F1 51.2% ----------atgttttggcctgtatgccggattcggcaaaagtcatgaagaggaagccgatggcgcgg-----------------------------taagaatgcaggtcagtgagt--------------------------------------------- 3 Shyg_B_P_7_M1_F1 53.8% ----------gcgcttcggttggtatgccggattcggtgaaagtcatggaagaggagccgatggcgcgg-----------------------------taagaatgcaggtcagtgagt--------------------------------------------- 4 Shyg_B_P_4_M1_F1 52.5% ----------gtgcttcggttggtatgccggattcggtgaaagtcatggaagaggagccgatggcgcgg-----------------------------taagaatgcaggtcagtgagt--------------------------------------------- 5 Salb4_A_G_3_M1_F1 43.8% ----------ggcattcacccgcattgccggaatctttgaagcttgcgggagagagtgactgggctgag-----------------------------tgaaaccccaggtcagcgaga--------------------------------------------- 6 Salb4_A_G_5_M1_F1 45.0% ----------gactttcaacccaattgcggcattctcgcaagcttgcagaaataggctgaactgctagg-----------------------------caaagccgcaggtcatcgagg--------------------------------------------- 7 Sgri5_A_G_9_M7_F1 48.8% ----------acacaaggacggatatgccggaattcggagaagtgagtaaaaacaggactccgtgtaca-----------------------------tagaacaccaggtcagcgagt--------------------------------------------- 8 Tfus1_A_G_11_M1_F1 42.5% ----------tcttattggggagcttggtcttcttttcggaagtgaatgaaattggtgctgcacgctgg-----------------------------taaagttgcaggtcgtttagg--------------------------------------------- 9 Tfus1_A_G_10_M7_F1 42.5% ----------tcttattggggagcttggtcttcttttcggaagtgaatgaaattggtgctgcacgctgg-----------------------------taaagttgcaggtcgtttagg--------------------------------------------- 10 Tfus1_A_G_1_X_F1 43.0% ----------accccacaatccctcctgtacgattttgaaaagtgaatgaaatcagcgccgcgcgttag-----------------------------taaagtcgcaggtcgtctag---------------------------------------------- 11 Tfus1_A_G_6_M7_F1 43.8% ----------gtgcttttgttcttttgtttgatttttgggaagtgaatgaaatcagcatgccgcgctgg-----------------------------taaactcgcaggtcatgtagt--------------------------------------------- 12 Sfla1_A_P_3_M1_F1 50.0% ----------gcgaaaggggttttatgtctgttcctttgaaagtactcagaactgagtccctgcggcga-----------------------------taaagccgcaggtcgcgcagt--------------------------------------------- 13 STRE34_P_5_M1_F1 51.2% ----------gtgaaatgagttttatgtctgtttctttgaaagtactcagaactgagtccctgcggcga-----------------------------taaagccgcaggtcgcgcagt--------------------------------------------- 14 Srap1_G_1_M1_F1 41.2% ----------gacctgccagagaaatgtccgtttccgtgagagtaagtaaaatccactcagtcacgacg-----------------------------tgaaacagcagatcacgacgt--------------------------------------------- 15 Sgri5_A_G_7_M1_F1 42.5% ----------tcgaggtgggcgatatgtctctttctgaagaagtaagtaaattcagctccgtcacctca-----------------------------taaaaccgcaggtcacgaagt--------------------------------------------- 16 Sfla1_A_P_1_M1_F1 51.9% ----------gcgatagaagcggtttgtcgaaatcgatgaaagtgctgcagaacgtctctcttccctga-----------------------------caaactcgcagttcagcaag---------------------------------------------- 17 Tcur_A_G_4_M1_F1 47.5% ----------ggacagcgcccgatatgtccagatcgaaaaaagtaatggattctggcatcctcctgaga-----------------------------taaacccgcaggtcagccagt--------------------------------------------- 18 Tcur_A_G_15_M1_F1 45.0% ----------gagcgatgtcccaaatgtctgatcctgtaaaagtgctagattctggcctgcgctgggca-----------------------------taaacccgcaggtcaatcagt--------------------------------------------- 19 Svir_A_G_9_M7_F1 36.2% ----------agtggaaggaattccctcctgccggtggcagactgaatgaaaaccacttgctgcccgaa-----------------------------taaactcccaggtcagcaagt--------------------------------------------- 20 Svir_A_G_8_M7_F1 36.2% ----------ggatgaccacgccctacccactctgtgtcagactgaatgaaaatcgctcattggccggg-----------------------------taaaagcccaggtcaacaagt--------------------------------------------- 21 Svir_A_G_7_M7_F1 35.0% ----------ggatgagcactccccgctcactctgtgtcagactgaatgaaaaccgctcgttggccggg-----------------------------taaatgcccaggtcaacaagt--------------------------------------------- 22 Svir_A_G_10_M7_F1 35.0% ----------gaatgcgcacccccgcctgccccgtcgccaaactgaatgagaactgcccatcgaccggg-----------------------------taaactcccaggtcaacaagt--------------------------------------------- 23 Sesp_A_G_5_M7_F1 37.5% ----------gccacaccagacataaacgagaccacaatgtacagaatcaatactagccggtagccctg-----------------------------taacctcccaggtcaagaagc--------------------------------------------- 24 Sesp_A_G_4_M7_F1 32.5% ----------gacgggacaaaccattccgagacaggcgtgaaccgaatcaaaacacgcggagaacgcca-----------------------------caaatcccctggtcaagaagt--------------------------------------------- 25 Nfar_A_G_12_M1_F1 40.0% ----------gaggtggatggcggcgcgtgagttgggtgaaagtgaatgaaaactggggtagtgggctg-----------------------------agaacatgcaggtcaggaagt--------------------------------------------- 26 Nfar_A_G_15_M7_F1 47.5% ----------tcttgtccctcagcgaggtacagcggtggaaagtgaatgaaaaacggggttgggggctg-----------------------------agaactcgcaggtcaggaagt--------------------------------------------- 27 Nfar_A_G_13_M1_F1 41.2% ----------ccggaaacgcgcggcgggtgggggtgcggaaagtgaatgaaaaatgggtgatcggcttg-----------------------------gaaacgtgcaggtcaggaagt--------------------------------------------- 28 Svir_A_G_1_M7_F1 42.5% ----------ttggatagtctctgcgtcataaggcgctcagagtgaatgaaaaacgggtcgccaggcgg-----------------------------taaacatgcaggtcacgaagt--------------------------------------------- 29 Svir_A_G_3_M7_F1 42.5% ----------taggatcctgagatgtcgcgcacaacttcagagtgaatgtgaatcgggttactcctcgg-----------------------------tagaaccgcaggtcaggaagt--------------------------------------------- 30 Sare2_A_G_5_M7_F1 38.8% ----------actgctgcaggaagacgatcttgcaggccctagtgaatgaaatccggaagattgatctc-----------------------------tagcgtcgcaggtgaagaagt--------------------------------------------- 31 Vmar2_A_G_3_M7_F1 36.2% ----------gagtgtcgaaagggccgatcttgcgaaccaaagtgaatgaaatcggagtggttgatcta-----------------------------tagcgccgcaggtcaagaagc--------------------------------------------- 32 Ncyr_0GU_G_3_M1_F1 45.0% ----------acacttcgcactgggccgcggaggcgacgaaagtgaacgaaattccgcctgctggtggg-----------------------------taaagttcctgttcaggaagt--------------------------------------------- 33 Ncyr_0GU_G_2_X_F1 35.4% ----------tggattcgctggtggactgcggaggtggaaaagtgaacgaaattcccgttgagggtggg-----------------------------tagagtgcctggtcaggaag---------------------------------------------- 34 Ndas_B_G_8_M1_F1 42.5% ----------ggttttggtggtgcatgtctgtttttcaggaagttggaaattcgactgcttgccattgg-----------------------------taagttcgcaggtcgttgact--------------------------------------------- 35 Nalb1_A_G_10_M1_F1 35.0% ----------aaggggtgtcggttttgtctgtttctcgacaacatgcagaaatgacgggtcggccggga-----------------------------taacgttgcaggtcagaaaga--------------------------------------------- 36 Nalb1_A_G_23_M1_F1 36.2% ----------gaggggtgtcggttttgtctgtttctcgacaacgtgcagaaatggtggctgggccggga-----------------------------tagcgttgcaggtcaggaaga--------------------------------------------- 37 Xcel_A_G_9_M1_F1 36.2% ----------acgccgagaagctgagcccggtgcgcggtgaagtgatgctggacgcgggatcgacggga-----------------------------taacgacgcaggtcgcgaagt--------------------------------------------- 38 Cglo_A_G_2_M7_F1 31.9% -------------------------------------------ttaataaaaacagctacaaagatggg-----------------------------tttcataccagataattaagt--------------------------------------------- 39 Tcur_A_G_8_M1_F1 33.3% ----------tctcgtgccagtccagccttcactccaatccacaaggtcacaaatcagtaacgccgccc-----------------------------tataatcccaggtcagcaaggg-------------------------------------------- 40 Sare2_A_G_7_M1_F1 24.0% ----------gcgacctcggccgcgtccccgcagccaccaagaccaacgactaaagatcaaccaaaccg--------------------------------------aggtggtccagtttcagccggaccacggtggtcccgtttgaggcggcgttgacacaa 41 Paci3_A_G_12_M1_F1 27.7% ----------ggaggccgacgggttggtcaccagcgggttacaccaccataaggggcactactgagacg-------------------------cggttgaactccgcccgcgcgaag---------------------------------------------- 42 Caur5_A_G_1_M7_F1 32.5% ----------tggggcacagcctctctcttgctgctgagaagtcgtatgtaaactgaacttacggctcg-----------------------------ttaatgcgctgttcagcaagt--------------------------------------------- 43 Mcur_A_G_1_M7_F1 28.8% ----------tacagcacggaaccgatttcagaaattagcagttgtatgtacactggttaaatacgtag-----------------------------tgaattagctgttcactaagt--------------------------------------------- 44 Cres_A_G_7_M7_F1 29.6% ----------ttaaccctgccaatgtagtggggctgtggaagctgtagctacaatgtccagagggctcg-----------------------------catttgtactgttcagcaaggg-------------------------------------------- 45 Cdip_G_G_1_M7_F1 36.2% ----------aaagatgaagcagaaaaattgctgaaacaaagttatatgtaataagctctaactgtctc-----------------------------taaacatgcagcttgataaga--------------------------------------------- 46 Cdip_H_G_1_M7_F1 37.5% ----------aaagatgaagcagaaaaattgctgaaacaaagttatatgtaataagctctaactggctc-----------------------------taaacgtgcagcttgataagt--------------------------------------------- 47 Caci_A_G_12_M1_F1 48.8% ----------cccgattgacacgtatgcccgaatctgcggaacccaacggcagccgcatctcagcccga-----------------------------tagacaagcacgtcaagcaga--------------------------------------------- 48 Nalb1_A_G_11_M7_F1 24.4% gtgttggtgagttctggtcggttctgtggggctgtggtagggatgagtgagaagcagaggccaccgccaaccgaaggttgcgggaagataacggcctctgtttccgcaggtcattttcc--------------------------------------------- 49 Cure_A_G_6_M7_F1 35.0% ----------ggtaattcgggactggggatggcttcgtacagttgaagctagaatgaggcttaggctcg-----------------------------aatattcgctggtcgtccagt--------------------------------------------- 50 Nmul2_A_G_11_M1_F1 38.8% ----------cctctcggatgcgtcgcgcggcgacgaaaaaaccgaagtagattcgcgctcgtggatcc-----------------------------cgtccttgcaggtccgcaagt--------------------------------------------- 51 Bsax_0DD_G_1_M1_F1 16.8% ----------gcttcgtgatggtccacgcggcgactgtaggaccagggtgagacgctttcgactgggca------------gcaccgccagtggtacctcgtcggccagatcagggggctcatgtccatcacgca----------------------------- 52 Tcur_A_G_11_M1_F1 21.2% ----------gtcatcagaacgggccctccgtggcctcttccccgcgcgagtggggtgatccggttcgg------------cggcgggtgacggccgctgacatcac--------------------------------------------------------- 53 Cter3_A_G_4_M1_F1 26.3% ----------cgaggggatcgggttccccggacgtcggacctgcggcaggtcacggggttttccgaaag-----------------------cccctgtggacccgcagcttcccatccgaggcgtac------------------------------------ 54 Bani_H_G_1_M1_F1 29.1% ------------------------------------------gtcgccgtcggcattgcctccaccctg-----------------------------tgaacctgtccgtccctatacggcaata-------------------------------------- 55 Sbin_A_G_1_X_F1 25.0% ----------ggatcgcgggggcattcggtctggtgagacaaagagccgaccgtcgccctcgatgtcag-----------------------------cgaaccggcccgtcacggtca--------------------------------------------- 56 Nalb1_A_G_33_X_F1 22.6% ----------ccgaggtcggagatggcgcggccgcgcacggaccggccgaagcggtgcgttctcgtcgg------gcatagcggaacctcaccaccggccgctctctccgtcgtgaggttctcgtatcgcc--------------------------------- 57 Afer1_A_G_2_M7_F1 32.2% ----------ccgggaggtggccgtggcctaaattcagactgtcaagcaaatggggggaagcccaccgg-----------------------------tcgtctgtccggcgatctggaggtcccacgt----------------------------------- 58 Tbis_A_G_10_M1_F1 20.2% ----cgccgcgggcccgtacggcggcgccgttcccggctcgggtgatcgggattcgcggtccgcgggct----cgggatcggatcggaagtggtatgaaggattagccggccggaaaccggc------------------------------------------ 59 Srap1_G_7_M1_F1 25.0% ----------agcaccggattcatctcgtcgatcgctgcaagcttggcgagtgggttgctagctcctgc---ctcttgtgggagctgccggaccgcatcccgcccccaggtcgcgac----------------------------------------------- consensus/90% ..........sssssssssssssssssssssssssssssssusssssssssssssssssssssssssss.............................ssssssssCsssTsusssss.............................................. |
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