Reference sequence (1): Tsp_A_G_6_X_F3 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . . . : . . . . 3 . . . . : . . . . 4 . ] 416 1 Tsp_A_G_6_X_F3 100.0% ------------------------------------------------------ttccatcgtgatacgaggta-----------------------------------------------------------------ggaagaaagggttcccctaaaaatctctgtagaaatgttttccaagggaa------actatagcgt-----------------tttaagggaagaagactttttgtaaaataaagtcttccctaacttctcttctcgatctatatcatttataagtcacaattg-gaaaactaaaacaaga-taatgtgttctatggaaaactttgacataaatacactttcacacaacagagaaacaaataaataacaccaatacaaaataatccccaaggaaacg 2 Tsp_A_G_7_X_F3 88.2% ------------------------------------------------------ttacatcgtgatacacggtg-----------------------------------------------------------------ggaggaaatggttcccctaaaaatctctgtagaaacgttttccacgggaa------aagtttgcag-----------------attaggggaagaagacatttctgaaaatacattcttccctgacccctcttcttgatctatatcatttataagtcacaattg-gaaaactaaaacaaga-taatgtgttccatggaaaactttgacataaatacactttcacaccacagagaaacaaataaataacaccaatacaaaataaatcccaaggaaagt 3 Tsp_A_G_1_X_F3 82.4% ------------------------------------------------------ttctgtcgtgatacggggtg-----------------------------------------------------------------ggaggaaatgtttcccctagaaatctctgtagaaacgatttccacgggaa------aagttaatag-----------------cctacgggaagaagccatttctgaaaatacattcttccctggcctctcttcccgatccatatcatttataactcacaattg-gaaaactaaaacaaagctaatatattccatggaaaactttgacataaaaacactttcacacaacacacaaacaaataaataacacccaaacaaaataaaccccaaagaaaca 4 Tsp_A_G_14_X_F3 81.0% ------------------------------------------------------ttccatcgtgatacggggtg-----------------------------------------------------------------ggaggaaagggttcccctaaaaatctctgtagaaatgttttccacgggaa------gctttaacgc-----------------tttacgggaagaagcctttttgtaaaatacattcttccctagaccctcttcccgatccatatcatttacatgcaacaacgaggaaaaataaaacaaaattaatgtacttaacgagaaacacttacacaaaaacactttcacacaacaccaaaacaaataaataacacc-caacaaaataaaccactgggaaaca 5 Tsp_A_G_12_X_F3 79.2% ------------------------------------------------------ctccattgtgatacgggttg-----------------------------------------------------------------ggaggaaatggttcccctggaaatctctgtagaaacgttttccacgggaa------actttaacgc-----------------tttacgggaagaagcctttttgtaaaatacactcttccctagaccctcttcccgttccatatcatttacatgcaacaacgaggaaaaataaaacaaaattaatgtacttaacgagaaacacttacacaaaaacactttcacccaacaccaaaacaaataaataacaccccaacaaaataaaccccaaggaaaca 6 Tsp_A_G_5_X_F3 77.3% ------------------------------------------------------ttccatcgtgatacggggtg-----------------------------------------------------------------ggaggaaatagttcccttagaaatctctgtagaatcgttttctacgggaa------actttaacgc-----------------tttacgggaagaagactttttgtaaaataagttcttccctagaccctcttcccattccatatcatttacagtcaacaatga-agaaactaaagaaaaattaatacttccaatgggaagaccctgcacaaaaacactttcacacaaaaccaaaacaaataaataacaccacaacaaaataaaccccaaagaaaca 7 Tsp_A_G_3_X_F3 76.9% ------------------------------------------------------ccccaccgtgatacggggtg-----------------------------------------------------------------ggaggaaagggttcccttggaaatctctgtagaaatgttttccacgggaa------gctttaacgc-----------------tttacgggaagaagcatctttgtaaaatacattcctccctggtccctcttcccagttcatatcatttaccatgcacaatga-gaaaactaaagaaatcctacaatgataaatgggaaacacttgcacaaaaacactttcacacaacagagaaacaaataaataacaccccaacaaaataaaccactgggaaaca 8 Pcal_A_G_2_X_F3 21.1% tgtgcgctgatttaagttacggcaatccccttaagcctttactcctcttccccttttgcccatagcctccaatgcgcgcacatatcctgcgctac-----------------------tagccgatccgcctctcgcgcgaagaatgacgcgcttttcacggcatctacgatagtggcgtcgagaagaatggcgggccacaacgcgggactgcgggcatatgtgtatgtaaagcgggggctgaaagcgacgcactgttccc-----------------------------acactcacaaggg-aaaaacttaaaaaac-------------------------------------------cacaagagccgaggacgtgagcg------------------------------- 9 Pcal_A_G_3_X_F3 20.3% gg-----------------------tcttggtcaagagcaaatacgacatacaacacagcggcaaacgccgatgtgcacactttctgcggacaaccctccttgacagacatacaaacgtgacactgcgattgtgaccgcgaagaatggcgcgcttacaacgacgtctgcgtaagtggcactgtgaagaatggcgtctcacaacgcgggacaacggacgtacgtgtatgtaaagagggggttgaaaaggacgcgccgacccc-----------------------------acaaaaacgaggg-aaaaacttaaaaaac-------------------------------------------cacaagagccgaggacatgagcg------------------------------- 10 Pcal_A_G_1_X_F3 21.8% cc-----------------------tcaactcccgaaacataccccccagaacgcccaactataaaaccgtttgtatatgtatatgtcaaa--------ctttacaaacatacaaaaatgtgccaacggc--------ggaagaatggcgcgcttacaacggcgtccgtctaagaggcccccagaagaatggcgtacgacaacgggggcaaacggatatgtgtgtatgtaaagagggggtcaaaagcgacgtgccgttccc-----------------------------acaaaaacgaggg-aaaaacttataaact-------------------------------------------cacaagagccgcaaacgtgagcg------------------------------- consensus/90% ......................................................ssssussuTuAsssssusTG.................................................................GuAGuAsussGssCssssuusuussTCTGsusAAusGssssCsAsuuGAA......ussssAuCus.................ssTAsGsuAAGAuGssssTssssusuAsusussssTCCC.............................ssssssACuAssu.uAAAAsTsAAusAAs...........................................CACAAsAsssuAusAsuTuAusu............................... |
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