Reference sequence (1): pHmar4_P_2_X_F12 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 [ . . . . : . . . . 1 . . . ] 136 1 pHmar4_P_2_X_F12 100.0% atggctatttt---------------------------catcgaccccccgggggttgcgggggtattggcggtcgacgaaaatagtgaagtgaaaccaggctagaaataggctgtgtcccgggaatcgggcatg- 2 Hmar2_A_P_4_X_F12 100.0% atggctatttt---------------------------catcgaccccccgggggttgcgggggtattggcggtcgacgaaaatagtgaagtgaaaccaggctagaaataggctgtgtcccgggaatcgggcatg- 3 Hmar2_A_P_3_X_F12 94.4% ctaggtatttt---------------------------cgtcgacccccggggggttgcgggggtattggcggtcgacgaaaatagtgaagtgaaaccaggctagaaataggctgtgtcccggaaatcgggcatg- 4 pHmar4_P_3_X_F12 94.4% ctaggtatttt---------------------------cgtcgacccccggggggttgcgggggtattggcggtcgacgaaaatagtgaagtgaaaccaggctagaaataggctgtgtcccggaaatcgggcatg- 5 Hmar2_A_P_2_X_F12 69.4% cacgcctattt---------------------------catcgaccccccgggggttcagggggtattgacggtcgacgaaagtaccgctgtggaagcgcccgatagagtggctgtactgcccagatccggcatg- 6 pHmar3_P_2_X_F12 69.4% cacgcctattt---------------------------catcgaccccccgggggttcagggggtattgacggtcgacgaaagtaccgctgtggaagcgcccgatagagtggctgtactgcccagatccggcatg- 7 Hmuk_A_P_1_X_F12 58.3% gttcgcgtttc---------------------------catcgacccccggggggttcgaggggtatcgagggtcgacggaaacgatgaagtgcaaacggcaagtagcagtgtatacgtggtcaaatcgaccatg- 8 pHmuk_P_1_X_F12 58.3% gttcgcgtttc---------------------------catcgacccccggggggttcgaggggtatcgagggtcgacggaaacgatgaagtgcaaacggcaagtagcagtgtatacgtggtcaaatcgaccatg- 9 Hmuk_A_G_12_X_F12 63.0% aaccccacttc---------------------------catcgaccccccgggggttcgggggctatcgaaggtcgacggaaacgatgaagtgtgaacggcgaatagaggtgcatacgtggcctaatcggccatg- 10 Hmuk_G_12_X_F12 63.0% aaccccacttc---------------------------catcgaccccccgggggttcgggggctatcgaaggtcgacggaaacgatgaagtgtgaacggcgaatagaggtgcatacgtggcctaatcggccatg- 11 pHvolA_P_1_X_F12 58.3% agattcgtttc---------------------------cgtcga-ccctcggggggtacgggggaattgagggtcgacggaaacgttgatgtgagttcgctatgtacagccgtctacccccgtgaattcggacgg- 12 Hvol_A_P_1_X_F12 58.3% agattcgtttc---------------------------cgtcga-ccctcggggggtacgggggaattgagggtcgacggaaacgttgatgtgagttcgctatgtacagccgtctacccccgtgaattcggacgg- 13 Hvol_A_G_2_X_F12 65.7% cccgacgtttt---------------------------cgtcgaccccccgggggttgcgggtgaattgagggtcgacggaaacactcttttgaattcgggtgatacacatcattgtacccgtgaattcgggatg- 14 Hvol_G_2_X_F12 65.7% cccgacgtttt---------------------------cgtcgaccccccgggggttgcgggtgaattgagggtcgacggaaacactcttttgaattcgggtgatacacatcattgtacccgtgaattcgggatg- 15 Npha1_A_P_1_X_F12 59.3% gagaacccttc---------------------------cgtcgaccctccgggggtgtggctggtattgccggttgacggaaacaaccaagttcaagcacggtgtacaaccgcttacgtgccgctttccggcatg- 16 pNpha1_P_1_X_F12 59.3% gagaacccttc---------------------------cgtcgaccctccgggggtgtggctggtattgccggttgacggaaacaaccaagttcaagcacggtgtacaaccgcttacgtgccgctttccggcatg- 17 Npha1_A_G_1_X_F12 52.8% gagtggctttc---------------------------catcaaccccccaggggtatggggttgattgggggtcgatggaaatttctttgtatgaaccagacgtagagctgttgacacgcctctagcagggctg- 18 Npha_G_1_X_F12 52.8% gagtggctttc---------------------------catcaaccccccaggggtatggggttgattgggggtcgatggaaatttctttgtatgaaccagacgtagagctgttgacacgcctctagcagggctg- 19 Hbor_A_G_3_X_F12 65.7% ggctgtctctc---------------------------catcga-cccccgggggtagcgggggtattggaggccgacggaaactacttgtagtaactgtccatcatagagcctgtgtgcccccaatcgggcatg- 20 Hbor_G_3_X_F12 65.7% ggctgtctctc---------------------------catcga-cccccgggggtagcgggggtattggaggccgacggaaactacttgtagtaactgtccatcatagagcctgtgtgcccccaatcgggcatg- 21 Harc_AG_4_X_F12 55.0% ttcttgtagctga-------------------------tgtcga-cccccgggggtactggggtgattgcgggtcgacggaaactacttgtgcaagacggccattttactgtctgtgtgcccaaaatcgggcac-- 22 Harc_G_4_X_F12 55.0% ttcttgtagctga-------------------------tgtcga-cccccgggggtactggggtgattgcgggtcgacggaaactacttgtgcaagacggccattttactgtctgtgtgcccaaaatcgggcac-- 23 pNmag1_P_1_X_F12 56.9% gtgtggttttc---------------------------catcga-cccctggggggaacacgtgtattaggggtcgatggaaattactttgtgtgaacggtcgaatgagtgactcatagccgtatttccggcatgg 24 Ngre_A_G_5_X_F12 59.3% cagcttgtttc---------------------------catcga-cctctaggggaagacagactattggaggtcgacggaaatcaatttgtgtcagcggcgtatacgtagactcaacgccggatttccggcatg- 25 Hhis2_G_1_X_F12 58.3% tagtcggtttc---------------------------cgtcgaccccccggggggaagcaccttattgatggtcgacggaaggtctttactgtgacccgccgttagcagccttatggcccgtatatcgggcatg- 26 Htia_A_G_3_X_F12 50.9% tatagcgcagt---------------------------catcga-ccccccgtgtgtagcgggctattgacggtcgacgaaaacactaacacctcttgtcgtataatacgccctatatggcccgatctggccatg- 27 Huta_A_G_1_X_F12 59.3% tatagtgtcgt---------------------------catcga-ccccccgggtttcgtgggctattgacggtcgacgaaaacactaactcccaggcagtggtatcacgtgctatatggccggtttcggccatg- 28 Huta_G_1_X_F12 59.3% tatagtgtcgt---------------------------catcga-ccccccgggtttcgtgggctattgacggtcgacgaaaacactaactcccaggcagtggtatcacgtgctatatggccggtttcggccatg- 29 Hmar2_A_P_1_X_F12 23.7% gagatgctctcaaacacgctgttcaagcaacgctgtgaaatcaacaatgtgctacggatgagcgtactgtgaaatactggatggacaaatatg------------------------------------------- 30 Hhis_A_G_2_X_F12 18.9% gagctgtcttctgatacactgctc--------------aaccggacagtctacggcgacgatccaactgaggatcagcgg--------------------------------------------tttctatagtcg consensus/90% sssssssssss...........................suTCGA.CCssssGGGssssssussssATsGssGGTCGAsGuAAussssssssssssssssssssssssssssssssssssssssssssssusssss. |
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