Reference sequence (1): Msil_A_G_2_M1_F1
Identities normalised by aligned length.
Colored by: consensus/70% and property
                                1 [        .         .         .         .         :         .         .         .         .         1         .         .         .    ] 135
 1 Msil_A_G_2_M1_F1    100.0%     -------------------tcgggattgtgacacttccggggggtctagcggctagttttgctgttagaatcaaga-----------------------------------------------------------    
 2 Mrub2_A_G_3_M1_F1    93.0%     -------------------tcgggattctgacacttccgggggatcgagcggctagttttgctgttagaatcaagt-----------------------------------------------------------    
 3 Trad_A_G_9_M1_F1     22.7%     tcgaggcgagaaccatgacaacctagctgacacttccgaggggggcagcccgtagatttgccgtgctgggctagt------------------------------------------------------------    
 4 Tthe_0JL_P_6_M1_F1   41.3%     cagaaaaacctgcaat-ccttcccaaatagacacataaaggggggtgagcgggcatttttgccgtcctggtcatgt-----------------------------------------------------------    
 5 Tthe2_B_P_7_M1_F1    38.7%     cagaaaaacctgcaat-ccttcctaaacagacacataaaggggggtaagcgggcgtttgtgccgtcctggtcatgt-----------------------------------------------------------    
 6 Tthe2_B_P_8_M1_F1    34.7%     agccaaagtccgtaac-tgctcccgaatagacacataaacgggggtgagcgggcgttttcgccgtcctggtcatgt-----------------------------------------------------------    
 7 Ths_0CC_G_8_X_F1     36.5%     caaggtttcccggagt-gcttccctaaaaaggacataaaggggggtgagctgggatttttgccgtctgggtcatg------------------------------------------------------------    
 8 Tsco_A_G_1_M1_F1     40.0%     -aggctaatctggactggctccctttacatacacatagaggggggtcggcgggggtttttgccgtctgggtcatgt-----------------------------------------------------------    
 9 Tsco_A_G_2_M1_F1     42.7%     -gttaatccttagactggctccctttatatacacatagaggggggtcagcgggggtttttgccgtctggatcatgt-----------------------------------------------------------    
10 Tosh_A_G_4_M1_F1     36.0%     aagaaaaacctggact-aactcctcttaagacacatagcagggggtaagttcgggcttttgccgtcctggtcaagt-----------------------------------------------------------    
11 Tosh_A_G_3_M1_F1     41.3%     cttgaaaagttgtcct-ggatcctaaaaagacacatagagggggtccaggggtgttttttgccgtcctggtcaagt-----------------------------------------------------------    
12 Ths_0CC_G_1_M7_F1    37.3%     -taggggacatggcaattttgcctttctcaaggcttagcgggggtaaaccgagggtttttgctgtgtagatcatct-----------------------------------------------------------    
13 Tfus1_A_G_3_M1_F1     0.0%     -----------------------------------------------------------------------------------------------acgagaagataacgccctctaaagctgcaggtcatcttct    
14 Tfus1_A_G_13_M1_F1    0.0%     -----------------------------------------------------------------------------------------------acgaggagataacgcctcgcaaagttgcaggtcagcttct    
15 Tfus1_A_G_9_M1_F1     0.0%     -----------------------------------------------------------------------------------------------acgcgaagataacagcccacaaaactgcaggtcaacaact    
16 Ndas_B_G_13_M1_F1     0.0%     -----------------------------------------------------------------------------------------------gcggcgagataacggcccgcgttgccgcaggtcgttaagc    
17 Nalb1_A_G_21_M1_F1    0.0%     -----------------------------------------------------------------------------------------------gcgggaagataacggcttgcgtttgtgcaggtcattttcc    
18 Nalb1_A_G_5_M1_F1     0.0%     -----------------------------------------------------------------------------------------------gcgggaagataacggcctctgtttccgcaggtcgttttcc    
19 Svir_A_G_5_M1_F1      0.0%     ---------------------------------------------------------------------------------------------cagaacgaacaaccgcccttctaaaaccgcaggtcgtgaagg    
20 Ndef_G_1_M1_F1       16.1%     -----------------------------------------------gcggtaggttttagggacaagaaattgtcctgctacatcaatctcttgtaggaagt--------------------------------    
21 Pmen_A_G_3_M1_F1     16.1%     -----------------------------------------------ttggtagatttatagcggctgatttttccttttaggaacagttggttacgctaagt--------------------------------    
22 Rsol_0Po_G_1_M1_F1   16.1%     -----------------------------------------------tcggtagatttttgagagccgtttttttgcttttggatcaagggcttgcggtaagt--------------------------------    
23 Goxy_B_G_1_M1_F1     22.8%     -----------------------------------------------tcggtagatttttgagggtggaattttcccttttctgtcagtaccttgccaggaaga-------------------------------    
24 Csal_A_G_1_M1_F1     14.3%     -----------------------------------------------ctggtggaaagatgtcggccgattttgtcctttagaaacaagcgtctatgattaga--------------------------------    
25 Paer_R_G_3_M1_F1     16.1%     -----------------------------------------------gcggtagatttttcgaggtgttttttcttctttaaaaacaattctgtacggtaagt--------------------------------    
26 Paer_R_G_2_M1_F1     23.2%     -----------------------------------------------ccggtagaattttgctg-ttgtttttctttttttaaaacaatgggatacggtaagg--------------------------------    
27 Malc_A_G_5_M1_F1     21.4%     -----------------------------------------------tcggtagaaatttgcaggttgattttctgtttatctaacaatcggttaagataagt--------------------------------    
28 Rsol_0Po_G_2_M1_F1   19.6%     -----------------------------------------------tcggtacgttttgggcggtggaatttttggttattaatcaatgggttgtgttaagt--------------------------------    
29 Acry_A_P_2_M1_F1     14.3%     -----------------------------------------------tcggtagttctttgacattgtgaattctttagttaaatcagatctttacaggaaga--------------------------------    
30 Gpro_G_3_M1_F1       19.6%     -----------------------------------------------ttggtaggcttttgcttgtgtgatttctttcggtagatcaatgatgtgcagtaaga--------------------------------    
31 Tvio1_A_G_2_M1_F1    14.3%     -----------------------------------------------ctggtagatttatccgcgcctgattttcttttgaggatcaggtaagtacgggaaga--------------------------------    
32 Avin2_A_G_3_M1_F1    14.3%     -----------------------------------------------ttggtagatttctcagcgtctgatttctttttctagatcaggcaagtatgggaagt--------------------------------    
33 Cvio_A_G_2_M1_F1     14.0%     -----------------------------------------------tcggtagaattttagatcgggtttttgtctttaaaaatcagtagcttgaaaatggtg-------------------------------    
34 Cvio_A_G_3_M1_F1     19.6%     -----------------------------------------------tcggtagatttttggggtgggtttttgtctttaaaaatcagcatcttgaaattggt--------------------------------    
35 Kpne_G_1_M1_F1       16.1%     -----------------------------------------------ttggtgaattgttgtgtgcttaaaaagctattataaaacagtaatatatctttagt--------------------------------    
36 Ddad_A_G_3_M1_F1     21.4%     -----------------------------------------------tcggtgaatttttgtgagtataaaaatagatttgaaaacaataggatatatttagc--------------------------------    
37 Csak_E_G_15_M1_F1    19.6%     -----------------------------------------------ttggtaggatgttgttgcgcgaaaaagtgtaataaatacaagtatatagttttaga--------------------------------    
38 Csak_B_G_11_M1_F1    19.6%     -----------------------------------------------ttggtgggatgttgttgcctgaaaaagcgtaataaatacagttatatagttttaga--------------------------------    
39 Ecol_AD_G_6_M1_F1    19.6%     -----------------------------------------------ttggtgggttgtttttatgggaaaaaatgctttaagaacaaatgtatacttttaga--------------------------------    
40 Efer_A_G_2_M1_F1     19.6%     -----------------------------------------------ttggtgggttgtttttatgggaaaaaatgctttaagaacaaatgtatactttgaga--------------------------------    
41 Ecol_H_G_6_M1_F1     17.9%     -----------------------------------------------ttggtagattgttgatgcggaataaatttttttaaaaacagttatgtatgcttagt--------------------------------    
42 Ecol_BB_G_4_M1_F1    18.2%     -----------------------------------------------ttggtagattgttgatgcggaataaatttgtttaaaaacagttatgtatgcttag---------------------------------    
43 Sson_A_G_5_X_F1      17.2%     -----------------------------------------------ttggtagattgttgatgcggaataaatttgtttaaaaacagttatgtatgcttagtgt------------------------------    
44 Ecol_AM_G_2_M1_F1    19.6%     -----------------------------------------------ttggtagattgttgatgtggaataaatttgtttaaaaacagatatgtatgcttagt--------------------------------    
45 Ecol_AQ_G_3_M1_F1    21.4%     -----------------------------------------------ttggtagattgttgttgtggaataaaattgtttaaaaacagatacgtatgcttagt--------------------------------    
46 Sent_S060_G_1_M1_F1  14.3%     -----------------------------------------------ttggtagtttgttatgtagtaaaaaagggcttttagaacaaatatatagttttagt--------------------------------    
47 Sent_0CDC_G_1_M7_F1  14.3%     -----------------------------------------------ttggtagtttgttatgtagtaaaaaagggcttttagaacaaatatatagttttagt--------------------------------    
48 Ecol_S_G_6_M1_F1     19.6%     -----------------------------------------------ttggtagattgtgactggcttaaaaaatcattaattaataataggttatgtttaga--------------------------------    
49 Ecol_AM_G_3_M1_F1    19.6%     -----------------------------------------------ttggtagattgtgactggcttaaaaaatcattaattaataataggttatgtttaga--------------------------------    
50 Ecol_AH_G_3_M7_F1    19.6%     -----------------------------------------------ttggtagattgtgactggcttaaaaaatcattaattaataataggttatgtttaga--------------------------------    
51 Ecol_AR_G_5_M7_F1    19.6%     -----------------------------------------------ttggtagattgtgactggcttaaaaaatcattaattaataataggttatgtttaga--------------------------------    
52 Ppro2_A_P_1_M1_F1    12.5%     -----------------------------------------------ttggtaacttttatgagcttagttttcttcaataaaaacaagtgtatacttttaga--------------------------------    
53 ERWI_G_5_M1_F1       23.2%     -----------------------------------------------ctggtagattttaacgggtggaaaaaaccgttacaatttaagtggttggttctaga--------------------------------    
54 Mfla5_A_G_1_M1_F1    14.3%     -----------------------------------------------ttggtggaaatgtaggtgttaatttttaattgataaatcaataagttgttttaagt--------------------------------    
55 Czan_G_2_M1_F1       16.1%     -----------------------------------------------ttggtagcaagtaacagtttgaaaattacttggtaaatcaattatgtataataaga--------------------------------    
56 Esir_B_G_3_M7_F1     13.6%     -----------------------------------------------gcggttgattttgcaaaaccgctattttccttga------------tttctttagt--------------------------------    
57 Csak_B_G_12_M1_F1    16.1%     -----------------------------------------------ttggtaggatgtggaaggcgaaaaaatgccattcagtacaaagggttacttttagt--------------------------------    
58 PSEU5_G_2_M1_F1      21.4%     -----------------------------------------------gcggtagatttttgcctccccgaataagccttatggttcaaaggtttatttttggt--------------------------------    
59 Rrub1_A_G_9_M1_F1    19.3%     -----------------------------------------------tcggtaagttttttgacatcgtgaaaagacatgataatcaacgacttccgtcgatga-------------------------------    
60 Zmob_B_G_3_M1_F1     15.8%     -----------------------------------------------ttggtagattttttgacatcgtgaatattgtttaatatcaatcccttatcgggatga-------------------------------    
61 Gxyl_A_G_3_M1_F1     16.1%     -----------------------------------------------ttggtagattctttgacaataaaatatgcttttggaatcaataggttccaggaaga--------------------------------    
62 Gxyl_A_G_2_M1_F1     16.1%     -----------------------------------------------ttggtagaatctttgacagtaaaataatcttttggaatcaatgagttccaggaagt--------------------------------    
63 Dole_A_G_9_M1_F1     10.7%     -----------------------------------------------ccggtagaaaaaacaaactgcaaaaatacttctaaaaacaaaaagttcgaggaagt--------------------------------    
64 Epyr_DS_G_2_M1_F1    19.6%     -----------------------------------------------ttggtagaaatatggagtggtaaaaaactttctaagatcagtgagatagttttaga--------------------------------    
65 Rpho_0B_G_5_M1_F1    12.5%     -----------------------------------------------tcggtgcgctgattgacatcagaaagagcctatgattacaatcctttccaggaaga--------------------------------    
66 Glov_A_G_1_M1_F1     23.2%     -----------------------------------------------ttggtaacattttggtctttgaaaattgctcgtgatttcatataactgcaacaagt--------------------------------    
67 Pcar1_A_G_1_M1_F1    21.4%     -----------------------------------------------ttggtgcagtttttcggtctttgaaaacctaatattttcatgtgcttaaaaatagt--------------------------------    
68 Goxy_B_G_2_X_F1      17.5%     -----------------------------------------------tcggtagctttttgaagtggaagatttgcacccataatcatatacttacaaacaagg-------------------------------    
69 Kvar1_A_G_2_M1_F1    16.4%     -----------------------------------------------ttggtgaattgtttttcagttaaaagctattgatattgaagtctatttttttagt---------------------------------    
70 Dala_0G2_G_1_M1_F1   19.6%     -----------------------------------------------agggtagttctattcgctcttattttagcgtagcatttcaatgtgttacaaaagga--------------------------------    
71 Dalk2_A_G_2_M1_F1    20.0%     -----------------------------------------------ttggccagtagtgggtcattttaattggccattaacagaa------------------------------------------------    
72 Tfus1_A_G_4_M7_F1     3.4%     -----------------------------------------------gtggcgggacgctgg-------------ctggtagttcggattagctatcactaaggagcagcgtgctcagggcgttcctcgcagcaa    
73 ROSE2_G_7_M1_F1      22.7%     ---------------------accgtcctgatgcggaacatgacttcgaggcttgtttttggaggcgaatcgcattagaatgcctgagacgcaagt---------------------------------------    
74 Ppro_A_G_2_M1_F1     17.9%     -----------------------------------------------ttggtggctgtttaatgaatgaaatagctcaattattttgaggaaatagaggaagt--------------------------------    
75 Gura_A_G_1_M1_F1     17.9%     -----------------------------------------------tcggtggaatttatgcagttgaatttgcttaatgattttgaggaagtagaggaagt--------------------------------    
76 Sthe3_A_G_5_M1_F1    13.1%     -----------------------------------------------gtggtagacttcgacggcctgacattgatccgagtgccgtcagaatgaggaaaatggaagt---------------------------    
77 SYNE12_G_1_M1_F1     11.5%     -----------------------------------------------ctagtagacatagaaggggtgctgctggtcaaaacctactaaaatcggcaaaaatggaagg---------------------------    
78 CYAN3_G_10_M1_F1     13.1%     -----------------------------------------------ctagtagacatagaggggttgctcctggttagaacccgctgaattcttttattctggaagt---------------------------    
79 Bani_C_G_4_M1_F1     11.9%     -----------------------------------------------tgagcggagtgtgcaaatccaatcttttgacatagtcgagagagtgttttgccagtaaagtcggact---------------------    
80 Dgob_A_P_8_M1_F1     24.6%     ----ttagatgcacaagggatacttctaggtcttgtgtacaagattggccacgtatttctgaagt----------------------------------------------------------------------    
81 Dgob_A_P_1_M1_F1     26.2%     --------------------------ccgcctatgggcctgcgccttacggcggattgacgctaggaaaagagcgtagttctgaagt------------------------------------------------    
82 Pami_J_G_3_M1_F1     14.3%     -----------------------------------------------tcggtaggatttgcggtagacgaaaagcattggtagaacaggtgcttgcaacaaga--------------------------------    
83 Sfum1_A_G_19_M1_F1   14.3%     -----------------------------------------------ctggtaagtgtctgcgtgctcgaaaataaacgtcatatcaaagtgttggaagaagt--------------------------------    
84 Acry_A_P_1_M1_F1     17.9%     -----------------------------------------------tcggtggaatggcgcctatggaaactcttgttccatatcatatggttacaggaaga--------------------------------    
85 Dgeo_A_P_1_M1_F1      0.0%     --------------------------------------------------------------------------ccgggcgggcagaggggacttctccgggggtgacggccaaagaaggctatgtttatgaagt    
86 Ddes_B_G_2_M1_F1     22.8%     -----------------------------------------------ttggtagatttgtgatgtttctgtaacgcgctgatttagtatttgtatttatgaaga-------------------------------    
87 Trad_A_G_10_M1_F1    31.0%     -----agaaccttgacaacgagacctcttggatacttccgagcccttttcgcgcgtttttagcgtctgggtctagt-----------------------------------------------------------    
88 Blon1_G_G_3_M1_F1    11.9%     --------------------------------------------------ccggttgcgtgggatccccgttacttcgattctaccatacgc-------------------------------------------    
89 Dtie_DS_G_3_M1_F1    10.7%     -----------------------------------------------ttggtaaccctggcgaggtgaaaaatcctcaatggttctcgaggcctatcaatagt--------------------------------    
90 Rgel_0IL_G_1_M1_F1   17.5%     ------------------------------------ggggtcagttctcaatgacgccaggggggcagttttgcgtgtcgcccaacaacccatttcgca------------------------------------    
91 Bast_A_G_1_M7_F1      7.6%     -----------------------------------------------atgcaaactcattaaaaatcagaaatcttggttattgtattgttgggattgcaaggatttctaagt----------------------    
92 Bani_H_G_2_M7_F1     10.6%     -----------------------------------------------aagagaagtgaataaaaacagacttccttcttttctgatatgttgagattattgggatttcttagt----------------------    
93 Sent_N_G_2_M1_F1      9.2%     -----------------------------------------------gcggtgccaccctcggctttaattgtgttccccgcgccgacgcgttccagcgcacgttactcgat-----------------------    
   consensus/90%                  ...............................................sssssssssssssssss..........s............................................................    

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