Reference sequence (1): Efae_F_G_2_X_F13 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . . . : . . . . 3 . . . . : . . . . ] 398 1 Efae_F_G_2_X_F13 100.0% gaaatctggctcgctgttacagctactaaataaagaaaaccc------------------accattgaaaaatggtgggtttttccgccaagaaggag---------------------------------------aaagtttggtataataaacgtgaag-aaaaaattcagacc---ttctaaactgaaatctagctatggataagtgatgcgaatacggaa---------tcatggagaaaaaataa--ttctcc----------------------------------------------------------------------------------------------------------------------------------------gag 2 Efae_X_G_2_X_F13 100.0% gaaatctggctcgctgttacagctactaaataaagaaaaccc------------------accattgaaaaatggtgggtttttccgccaagaaggag---------------------------------------aaagtttggtataataaacgtgaag-aaaaaattcagacc---ttctaaactgaaatctagctatggataagtgatgcgaatacggaa---------tcatggagaaaaaataa--ttctcc----------------------------------------------------------------------------------------------------------------------------------------gag 3 Efae_G_G_1_X_F13 98.4% gaaatctggctcgctgttacagctactaaataaagaaaaccc------------------accattgaaaaatggtgggtttttccgccaagaaggag---------------------------------------aaagtttggtataataaacgtgaagaaaaaaaatcagacc---ttctaaactgaaatctagctatagataagtgatgcgaatacggaa---------tcatggagaaaaaataa--ttctcc----------------------------------------------------------------------------------------------------------------------------------------gag 4 Efae_E_G_1_X_F13 44.9% ttaaataatgtggatgtcctgtttttagaacaaagggtggtccagaacagattccaatatattttggacgaaaactttt------------------------------------------------------atttgagttatgaaaaagcttaaattgttactgattagtggttca--ttctaaactgaaatctagctatggataagtgatgcgagtacggaa---------ctttggaaaaaaataa---ttctcc----------------------------------------------------------------------------------------------------------------------------------------gag 5 Lmon_AB_G_3_X_F13 45.8% ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag 6 Lmon_AH_G_3_X_F13 45.8% ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag 7 Lmon_ALC_G_3_X_F13 45.8% ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag 8 Lmon_G_5_X_F13 45.8% ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag 9 Lmon_G_1_X_F13 45.8% ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag 10 Lmon_AD_G_3_X_F13 45.8% ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaaccgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag 11 Lmon_K_G_3_X_F13 45.8% ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaaccgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag 12 Lmon_G_7_X_F13 45.8% ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------atataaggtaaccgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag 13 Spyo_G_G_2_X_F13 43.8% ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 14 Spyo_Q_G_1_X_F13 43.8% ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 15 Spyo_C_G_1_X_F13 43.8% ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 16 Spyo_0MG_G_1_X_F13 43.8% ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 17 Spyo_R_G_1_X_F13 43.8% ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 18 Spyo_O_G_1_X_F13 43.8% ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagactatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 19 Spyo_F_G_1_X_F13 44.8% ttaacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagactatttcttaataactaaaaatat-----------------------------------------ggtataatattcttaataaatgtagtaatacaggggctt--ttcgagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 20 Sdys1_B_G_2_X_F13 44.8% ttgacaaatttaacagttctctttttagaaccacgtaaactatatgattttccgcagtatattttagataaagactatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatggcgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 21 Sdys1_E_G_2_X_F13 44.3% ttgacaaatttaacagttctctttttagaagcacgtgaactatatgattttccgcagtatattttagataaagactatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatggcgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 22 Sdys1_A_G_2_X_F13 44.8% ttgacaaatttaacagttctctttttagaagcacgtgaactatatgattttccgcagtatattttagatgaagactattttttaataactaaaaatat-----------------------------------------ggtataatattcttagtaaatacagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatggcgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag 23 Saga_ILR_G_4_X_F13 42.9% ttaatgcaaaagtcagtactctttctagaacctagaagactctatgatttaccgcaatatgttattgataaggattatttcttgataggcgaaaatat-----------------------------------------ggtataatattagtaaaagcacaataataacaaggaatc--atcgaaactgaagtcctgctg-agacgaatggcgcgattacgaaa---------gctcaaaagaaaa--tt--ttctac----------------------------------------------------------------------------------------------------------------------------------------gag 24 Slut2_A_G_2_X_F13 36.8% caggtaaactattctgaggttttaacaaaa------------------------------gatttggagaaaaaagttgcaactataagttttaagattgttcaggaacgttgaaaaatcaaggt--------ttttaaggtataataaaactaaca-----------ttatggagctg-ttcgagactgaagtctggctg-agacaaatggcgcgattacgaga---------tttcgtgagaaaaattg--gtccac----------------------------------------------------------------------------------------------------------------------------------------gag 25 Smut1_B_G_2_X_F13 38.4% caagtgaattattctgaagtattaacaaaa------------------------------gctttgga-aaggaaactacaattataaaacaagaaaagcgctagaaagattgatttctagcgct--------tttttaggtataatataattaattaaaatcttttaaaaaggaatta-tttgaagctgaattctagctg-agatgaatggcgcgattacgaaa---------tgtcgtgacgaaaattg--gtccac----------------------------------------------------------------------------------------------------------------------------------------gag 26 Smut_G_G_1_X_F13 38.2% cgagtaaattattctgaagtattaacaaag------------------------------gctttgga-aaagaaactacaattataaaacaataaaatcgctagaaagattgatttctagcgat--------tttttaggtataatataagcaatcaaaaccttttaaaaaagaatcattttgaagctgaaatctggctg-agatgaatggcgcgattacgaaa---------tgtcgagacaaaaattg--gtccac----------------------------------------------------------------------------------------------------------------------------------------gag 27 Smut1_A_G_1_X_F13 38.2% cgagtaaattattctgaagtattaacaaag------------------------------gctttgga-aaagaaactacaattataaaacaataaaatcgctagaaagattgatttctagcgat--------tttttaggtataatataagcaatcaaaaccttttaaaaaagaatcattttgaagctgaaatctggctg-agatgaatggcgcgattacgaaa---------tgtcgagacaaaaattg--gtccac----------------------------------------------------------------------------------------------------------------------------------------gag 28 Slut2_A_G_1_X_F13 32.7% -------attttgctcaagcgccagctgaa------------------------------ggtgctg--caacatttaacatcgttcacggttcagattcaccagaatcagtagaacgcgaaattgccctttggtttggggaataaaataattaa-------------gtatggaatta-ttcggagctgaagtcaggctg-agacaaatggcgcgattacgaaa---------tttcgtgagaaaaaatg--gtccac----------------------------------------------------------------------------------------------------------------------------------------ga- 29 Sthe5_B_G_5_X_F13 38.8% ggaattaagttgcttgacatat-------g------------------------------attattaagaaataatctaatatggtgacagtcacatcttgtctaaaacgttgatatataaggat--------ttttaaggtataataaatataa-------------aaatggaattattttgaagctgaagtcatgctg-agattaatagtgcgattacgaaa---------tctggtagaaaaga-ta--tcctac----------------------------------------------------------------------------------------------------------------------------------------gag 30 Sthe5_M_G_3_X_F13 39.3% ggaattaagttgcttgacatat-------g------------------------------attattaagaaataatctaatatggtgacagtcacatcttgtctaaaacgttgatatataaggat--------ttttaaggtataataaatataa-------------aattggaattattttgaagctgaagtcatgctg-agattaatagtgcgattacgaaa---------tctggtagaaaaga-ta--tcctac----------------------------------------------------------------------------------------------------------------------------------------gag 31 Sthe5_D_G_3_X_F13 39.3% ggaattaagttgcttgacatat-------g------------------------------attattaagaaataatctaatatggtgacagtcacatcttgtctaaaacgttgatatataaggat--------ttttaaggtataataaatataa-------------aattggaattattttgaagctgaagtcatgctg-agattaatagtgcgattacgaaa---------tctggtagaaaaga-ta--tcctac----------------------------------------------------------------------------------------------------------------------------------------gag 32 Sdys1_D_G_1_X_F13 11.4% -------------------------------------------------------------------------------------------------------------------------gagtacctatcgttc--------------------------------------------cttcaaactggagtttatcaaccaagaaacctttcaatcactagaagaattagccctcaaaacgaaagattatgtccactggtggaactatcatcgcattcatggtagtcttaactaccaaactcccatgaccaaacgaattatcgcttaaaaagcactttataaaaattgttcagaaaagtgttgccttttcaaagtgcttttcttatgcttaaaaa consensus/90% ssussssusssssssGssssss.......u..............................usssTsuA.ssssussssssssssssssssssssssss.........................................uusssuuTAssssssA.............ussssu......TTssAuusTGAAuTCssGCTu.uGAsuAuTuusGCGAsTACGuAA.........TsTsssuussAAuA.su..sTCssC........................................................................................................................................GAG |
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