Reference sequence (1): Efae_F_G_2_X_F13
Identities normalised by aligned length.
Colored by: consensus/70% and property
                               1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .       ] 398
 1 Efae_F_G_2_X_F13   100.0%     gaaatctggctcgctgttacagctactaaataaagaaaaccc------------------accattgaaaaatggtgggtttttccgccaagaaggag---------------------------------------aaagtttggtataataaacgtgaag-aaaaaattcagacc---ttctaaactgaaatctagctatggataagtgatgcgaatacggaa---------tcatggagaaaaaataa--ttctcc----------------------------------------------------------------------------------------------------------------------------------------gag    
 2 Efae_X_G_2_X_F13   100.0%     gaaatctggctcgctgttacagctactaaataaagaaaaccc------------------accattgaaaaatggtgggtttttccgccaagaaggag---------------------------------------aaagtttggtataataaacgtgaag-aaaaaattcagacc---ttctaaactgaaatctagctatggataagtgatgcgaatacggaa---------tcatggagaaaaaataa--ttctcc----------------------------------------------------------------------------------------------------------------------------------------gag    
 3 Efae_G_G_1_X_F13    98.4%     gaaatctggctcgctgttacagctactaaataaagaaaaccc------------------accattgaaaaatggtgggtttttccgccaagaaggag---------------------------------------aaagtttggtataataaacgtgaagaaaaaaaatcagacc---ttctaaactgaaatctagctatagataagtgatgcgaatacggaa---------tcatggagaaaaaataa--ttctcc----------------------------------------------------------------------------------------------------------------------------------------gag    
 4 Efae_E_G_1_X_F13    44.9%     ttaaataatgtggatgtcctgtttttagaacaaagggtggtccagaacagattccaatatattttggacgaaaactttt------------------------------------------------------atttgagttatgaaaaagcttaaattgttactgattagtggttca--ttctaaactgaaatctagctatggataagtgatgcgagtacggaa---------ctttggaaaaaaataa---ttctcc----------------------------------------------------------------------------------------------------------------------------------------gag    
 5 Lmon_AB_G_3_X_F13   45.8%     ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag    
 6 Lmon_AH_G_3_X_F13   45.8%     ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag    
 7 Lmon_ALC_G_3_X_F13  45.8%     ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag    
 8 Lmon_G_5_X_F13      45.8%     ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag    
 9 Lmon_G_1_X_F13      45.8%     ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaactgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag    
10 Lmon_AD_G_3_X_F13   45.8%     ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaaccgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag    
11 Lmon_K_G_3_X_F13    45.8%     ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------gtataaggtaaccgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag    
12 Lmon_G_7_X_F13      45.8%     ttatatcaagtcaaagtactatttattgaacctagaaaaataaaaggatctccgcaagttactttagattctgattattttttacatgtggaaaatagt--------------atataaggtaaccgctgttctttgaaaacaaaataaattttatgtaaaccataaaatagca------ttcaaaattgaaatcttgctatggatgaatggcgcgattacggaa---------tcttggaggaaagaaaaaattctgc----------------------------------------------------------------------------------------------------------------------------------------gag    
13 Spyo_G_G_2_X_F13    43.8%     ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
14 Spyo_Q_G_1_X_F13    43.8%     ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
15 Spyo_C_G_1_X_F13    43.8%     ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
16 Spyo_0MG_G_1_X_F13  43.8%     ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
17 Spyo_R_G_1_X_F13    43.8%     ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagattatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
18 Spyo_O_G_1_X_F13    43.8%     ttgacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagactatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
19 Spyo_F_G_1_X_F13    44.8%     ttaacaaatttaacagttctctttttagaaccacgtgaactatatgattttccgcagtatattttagatgaagactatttcttaataactaaaaatat-----------------------------------------ggtataatattcttaataaatgtagtaatacaggggctt--ttcgagactgaagtctagctg-agacaaatagtgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
20 Sdys1_B_G_2_X_F13   44.8%     ttgacaaatttaacagttctctttttagaaccacgtaaactatatgattttccgcagtatattttagataaagactatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatggcgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
21 Sdys1_E_G_2_X_F13   44.3%     ttgacaaatttaacagttctctttttagaagcacgtgaactatatgattttccgcagtatattttagataaagactatttcttaataactaaaaatat-----------------------------------------ggtataatactcttaataaatgcagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatggcgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
22 Sdys1_A_G_2_X_F13   44.8%     ttgacaaatttaacagttctctttttagaagcacgtgaactatatgattttccgcagtatattttagatgaagactattttttaataactaaaaatat-----------------------------------------ggtataatattcttagtaaatacagtaatacaggggctt--ttcaagactgaagtctagctg-agacaaatggcgcgattacgaaa---------ttttttagacaaaaata--gtctac----------------------------------------------------------------------------------------------------------------------------------------gag    
23 Saga_ILR_G_4_X_F13  42.9%     ttaatgcaaaagtcagtactctttctagaacctagaagactctatgatttaccgcaatatgttattgataaggattatttcttgataggcgaaaatat-----------------------------------------ggtataatattagtaaaagcacaataataacaaggaatc--atcgaaactgaagtcctgctg-agacgaatggcgcgattacgaaa---------gctcaaaagaaaa--tt--ttctac----------------------------------------------------------------------------------------------------------------------------------------gag    
24 Slut2_A_G_2_X_F13   36.8%     caggtaaactattctgaggttttaacaaaa------------------------------gatttggagaaaaaagttgcaactataagttttaagattgttcaggaacgttgaaaaatcaaggt--------ttttaaggtataataaaactaaca-----------ttatggagctg-ttcgagactgaagtctggctg-agacaaatggcgcgattacgaga---------tttcgtgagaaaaattg--gtccac----------------------------------------------------------------------------------------------------------------------------------------gag    
25 Smut1_B_G_2_X_F13   38.4%     caagtgaattattctgaagtattaacaaaa------------------------------gctttgga-aaggaaactacaattataaaacaagaaaagcgctagaaagattgatttctagcgct--------tttttaggtataatataattaattaaaatcttttaaaaaggaatta-tttgaagctgaattctagctg-agatgaatggcgcgattacgaaa---------tgtcgtgacgaaaattg--gtccac----------------------------------------------------------------------------------------------------------------------------------------gag    
26 Smut_G_G_1_X_F13    38.2%     cgagtaaattattctgaagtattaacaaag------------------------------gctttgga-aaagaaactacaattataaaacaataaaatcgctagaaagattgatttctagcgat--------tttttaggtataatataagcaatcaaaaccttttaaaaaagaatcattttgaagctgaaatctggctg-agatgaatggcgcgattacgaaa---------tgtcgagacaaaaattg--gtccac----------------------------------------------------------------------------------------------------------------------------------------gag    
27 Smut1_A_G_1_X_F13   38.2%     cgagtaaattattctgaagtattaacaaag------------------------------gctttgga-aaagaaactacaattataaaacaataaaatcgctagaaagattgatttctagcgat--------tttttaggtataatataagcaatcaaaaccttttaaaaaagaatcattttgaagctgaaatctggctg-agatgaatggcgcgattacgaaa---------tgtcgagacaaaaattg--gtccac----------------------------------------------------------------------------------------------------------------------------------------gag    
28 Slut2_A_G_1_X_F13   32.7%     -------attttgctcaagcgccagctgaa------------------------------ggtgctg--caacatttaacatcgttcacggttcagattcaccagaatcagtagaacgcgaaattgccctttggtttggggaataaaataattaa-------------gtatggaatta-ttcggagctgaagtcaggctg-agacaaatggcgcgattacgaaa---------tttcgtgagaaaaaatg--gtccac----------------------------------------------------------------------------------------------------------------------------------------ga-    
29 Sthe5_B_G_5_X_F13   38.8%     ggaattaagttgcttgacatat-------g------------------------------attattaagaaataatctaatatggtgacagtcacatcttgtctaaaacgttgatatataaggat--------ttttaaggtataataaatataa-------------aaatggaattattttgaagctgaagtcatgctg-agattaatagtgcgattacgaaa---------tctggtagaaaaga-ta--tcctac----------------------------------------------------------------------------------------------------------------------------------------gag    
30 Sthe5_M_G_3_X_F13   39.3%     ggaattaagttgcttgacatat-------g------------------------------attattaagaaataatctaatatggtgacagtcacatcttgtctaaaacgttgatatataaggat--------ttttaaggtataataaatataa-------------aattggaattattttgaagctgaagtcatgctg-agattaatagtgcgattacgaaa---------tctggtagaaaaga-ta--tcctac----------------------------------------------------------------------------------------------------------------------------------------gag    
31 Sthe5_D_G_3_X_F13   39.3%     ggaattaagttgcttgacatat-------g------------------------------attattaagaaataatctaatatggtgacagtcacatcttgtctaaaacgttgatatataaggat--------ttttaaggtataataaatataa-------------aattggaattattttgaagctgaagtcatgctg-agattaatagtgcgattacgaaa---------tctggtagaaaaga-ta--tcctac----------------------------------------------------------------------------------------------------------------------------------------gag    
32 Sdys1_D_G_1_X_F13   11.4%     -------------------------------------------------------------------------------------------------------------------------gagtacctatcgttc--------------------------------------------cttcaaactggagtttatcaaccaagaaacctttcaatcactagaagaattagccctcaaaacgaaagattatgtccactggtggaactatcatcgcattcatggtagtcttaactaccaaactcccatgaccaaacgaattatcgcttaaaaagcactttataaaaattgttcagaaaagtgttgccttttcaaagtgcttttcttatgcttaaaaa    
   consensus/90%                 ssussssusssssssGssssss.......u..............................usssTsuA.ssssussssssssssssssssssssssss.........................................uusssuuTAssssssA.............ussssu......TTssAuusTGAAuTCssGCTu.uGAsuAuTuusGCGAsTACGuAA.........TsTsssuussAAuA.su..sTCssC........................................................................................................................................GAG    

MView 1.60.1, Copyright © 1997-2015 Nigel P. Brown