Reference sequence (1): Chyd1_A_G_3_X_F2 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . . . : ] 254 1 Chyd1_A_G_3_X_F2 100.0% gacgtattatgacttttgtatttaccaattgctgtcgacctgtaatccccccaaaaacccccggggatcgacagcaaaaggta--aattctggtatgtgttgactttcaagagcttgtg-----------------------------------------------------gagtataatagaaataacatacagcagcttgaaaacttaaccatttgttccttgtaagatttctcaagccatctacgg---- 2 Csac_A_G_3_X_F2 97.4% gatgtattttgacttttgcatttaccaattgctgtcgacctgtaatccccccaaaaacccccggggatcgacagcaaaaggta--atttctggtatgtgttgactttcaagagcttgtg-----------------------------------------------------gagtataatagaaataacctacagcagcttgaaaacttaaccatttgttccttgtaagatttctcaagccatctacgg---- 3 Cbes_A_G_4_X_F2 91.3% ggcgtattatgacttttgtatttaccaattgctgtcgacctgcagtacccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcaagagcttgtg-----------------------------------------------------gtgtataatagaaacaacatactgcagcttgaaaacttaaccatttgttccttgttgcattctgcaagctatccacgg---- 4 Cbes_A_G_5_X_F2 89.7% aataaattatgacttttgtatttaccaattgctgtcgacctgcagtacccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcaagagcttgtg-----------------------------------------------------gtgtataatagaaacaacatactgcagcttgaaaacttaaccatttgttccttgttgcattctgcaagctatccacgg---- 5 Ckro_A_G_2_X_F2 87.2% tattaattaaaacttttgtatttaccaattgctgtcgacctgaaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcatgcttttgag-----------------------------------------------------gtgtataatagaaacaacatactgcagcttgaaaacttaaccatttgttccttgtggcatttttcaacctatccacggg--- 6 Ckro_A_G_5_X_F2 88.7% aataaattttgacttttgtatttaccaattgctgtcgacctgaaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcatgcttttgag-----------------------------------------------------gtgtataatagaaataacatactgcagcttgaaaacttaaccatttgttccttgtggcatttttcaacctatccacgg---- 7 Ckro_A_G_3_X_F2 90.8% gacgtattatgacttttgtatttaccaattgctgtcgacctgaaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcatgcttttgag-----------------------------------------------------gtgtataatagaaataacatactgcagcttgaaaacttaaccatttgttccttgtggcattcttcaacctatccacgg---- 8 Ckro_A_G_4_X_F2 83.1% tttactacgctgattttgtagtttccaattgctgtcgacctgaaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggtatgtgttgactttcatgcttttgag-----------------------------------------------------gtgtataatagaaataacatactacagcttgaaaacttaaccatttgttccttgtgacattcttcaacctatccacgg---- 9 Ckri_A_G_6_X_F2 85.7% agccaattctttattttgcatttaccaattgctgtcgacctgtaatcctcccaaaaacccccgggggtcgacagcaaaaggta--atttctgacatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctatagcagcttgaaaacttaaccatttgttccttgcggctttcttcaaactatctacggg--- 10 Clac_A_G_5_X_F2 87.7% agccaattctttattttgtatttaccaattgctgtcgacctgtaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggcatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacccatagcagcttgaaaacttaaccatttgttccttgcggcttttttcaacctatctacgg---- 11 Ckri_A_G_5_X_F2 87.8% tacatatatcagtttttgtatttaccaattgctgtcgacctgtaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctgacatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctacagcagcttgaaaacttaaccatttgttccttgcggcttttcccaaactatctacggg--- 12 Clac_A_G_2_X_F2 88.7% tacatatttaaacttttgtattttccaattgctgtcgacctgcaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctgacatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctatagcagcttgaaaacttaaccatttgttccttgcggcttttctcaaactatctacgg---- 13 Ckri_A_G_4_X_F2 87.2% gacatatttaaacttttgtattttccaattgctgtcgacctgcaatcccaccaaaaacccccgggggtcgacagcaaaaggta--atttctgacatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctatagcagcttgaaaacttaaccatttgttccttgcggctttcttcaaattatctacgg---- 14 Ckri_A_G_7_X_F2 87.7% atacttaatttaactttgtatttaccaattgctgtcgacctgtaatccccccaaaaacccccgggggtcgacagcaaaaggta--atttctggcatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctacagcagcttgaaaacttaaccatttgttccttgcggcttttctcaaactatctacgg---- 15 Ckri_A_G_8_X_F2 84.3% agttctttagtgattttgtatttaccaattgctgtcgacctgtaat-cccccaaaaacccccgggggtcgacagcaaaaggta--ttttctggcatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataatctatagcagcttgaaaacttaaccatttgttcctttcggcttttttcaacctatctacgggg-- 16 Clac_A_G_8_X_F2 85.2% agttttttagtgattttgtattttccaactgctgtcgacctgtaatccccccaaaaacccccgggggtcgacagcaaaaggta--ttttctggcatgtgttgactttcaagagtttgtg-----------------------------------------------------gggtataatagaaataacctatagcagcttgaaaacataaccatttgttccttgtggctttcttcaaactatctacggg--- 17 Ckro_A_G_8_X_F2 87.7% aggcataattagcttttgtacttaccaattgccgtcgacctgcaatccccctaaaaacccccggggatcgacagcaaaaggta--atttctggtatgtgttgactttcaaaagtttgtg-----------------------------------------------------gagtataatagaaataacatactgcagcttgaaaacttaaccatttgttccttgtggcatttttcaagccttctacgg---- 18 Chyd1_A_G_4_X_F2 86.7% ggcataatttagcttttgtatttaccaattgttgtcgacctgcaatccccccaaaaacccccgggggtcgacagcaaaaggaa--gtttttggcatcccttgactttcaaaagctttag-----------------------------------------------------gggtataatagaaataacctacagcagtttgaaaacttaaccatttgttccttgtgatatttttcaagccatctacgg---- 19 Cbes_A_G_7_X_F2 83.1% gacttaaattagcttttgtatttaccaattcctgtcgacctgcaatccccccaaaaacccccgggggtcgacagcaaaagaca--aattttggcatgtattgacttgtgggcttttgag-----------------------------------------------------gtgtataatagaaacaacatactgcagcttgaaaacttaaccatttgttccttgttgcattctgcaagctatccacgg---- 20 Cowe_A_G_3_X_F2 81.5% agttatttagcatttttgtattttccaattgctgtcgacctgcaatccccccgaaaacccccgggggtcgacagcaaaaggaa--tatattaccatgtgttgactttcaagagtttgtg-----------------------------------------------------gagtataatagaaataatctatagcagtttgaaacttcatccatttgttcctcataagactttacaagctctctacgg---- 21 Cobs_A_G_5_X_F2 76.4% atgtactctgcatttttgtattttccaattgctgtcgacctgcaataccctcaaaaa-ccccgggggtcgacagcaattggaa--aattttaacacatcttgactttcttgagcttgtg-----------------------------------------------------gggtataatagaaataacttatagtagtttgaaacttcatccatttgttccccataagacttcccaagctccctacgg---- 22 Clac_A_G_10_X_F2 26.6% tgattgtattcggtttcatgtttgtgggatgtggctttgaatggatttctggcagcagct----ggatagacggaaaggtttga-aaggcttcttttcttttatgcaactgggtttgtgttgattttgagtggatgtattaacataaaaacattgacaggggtgcataaagttgatataataaaatcaa-----------------------------------------gcttttcaacct------------ 23 Ckri_A_G_11_X_F2 27.0% tgattgtattcggtttcatgtttgtgggatgtggctttgaatggatttctagcagcagct----ggatagacggaaaggtttga-aaggcttcttttatttgatgcaactgggtttgtgttgattttgagtggatgtattaaaataaaaacattgacaggggtgtataaagttgatataataaaatcaa-----------------------------------------gcttttcaacct------------ 24 Clac_A_G_9_X_F2 25.7% ttattgtattcggtttcatgtttgtgggatgtggctttgaatggatttctggcagcagct----ggatagacggaaaggtttga-aaggcttcttttcttttatgcaactgggtttgtgttgattttgagggaatgtatcaaaataaaaacattgacaggggtgcataaagttgatataataaaatcag-----------------------------------------gctttttaaccg------------ 25 Clac_A_G_11_X_F2 25.7% gatttgtattcggtttcatgtttttgggacgtggctttgaatggatttctggcagctgct----ggatagacggaaaggtttga-aaggcttcttttatttgatgcaactgggtttgtgttgatttctaaggggtgtatcaaaataaaaacattgacagaggtgcataaagttgacataataaaatcag-----------------------------------------gctttttaacct------------ 26 Ckri_A_G_2_X_F2 27.0% tatttgtattcgatttcaagtttgcaggatgtgggtttgaatgtatttctggcagcaact----ggatagacgaaaaggcttga-aaggcttttcctatttgatgtagctgggtttgtgttgatattgaggtgatgtattaatataaaaacattgacagtggtgcataaagttgatataataaaatcaa-----------------------------------------gcttttcaacct------------ 27 Clac_A_G_6_X_F2 26.1% --tttgtattcggtttcatgcttgcgggctgtgggtttgagctgatttttggaagcagat----ggatagacggaaagggttgagaaggttcttttcttttgatacaactgggtttgtgccggttttgagggcatgtattaaaataaaaacattgacagtggtgcataaagttgatataataaaatcaa-----------------------------------------gctttttgacggg----------- 28 Csac_A_G_1_X_F2 29.5% ggtttgtatacggtttcagatttgaagtacgtggttttgctttaatctctggcagcagct----ggatagacggaaagggttga-taggtttttatcgcttgactttccttagctgatattagttttccacagatgttttgatataaaaacattgacaggtgtgcataaagttgatataataaaatcaa-----------------------------------------gctcttcaacgt------------ 29 Cobs_A_G_10_X_F2 24.9% atattgtattcggtttcgagcttgcagtacgtggacttgaccaaacttctggcatctgct----ggatagacggaaaggtttta-tggtcttttgtcccttgattcttctgggctgatttaaattttccacagatgttttaatataaaaatatttacagaggtatataatcttgatataataaaatcaa-----------------------------------------gctcttgaacgt------------ 30 Cobs_A_G_7_X_F2 24.5% atattgtattcggtttcaagcctgcagtacgtagattagaccaaacttctggcagcagct----ggatagacggaaagatttta-tgggcttttatcccttgattcttctgggttgatttgagtttttcacaaatgttttaatataaaaacattgacaggggtgtataatcttgatataataaaatcaa-----------------------------------------gctcttgaacgt------------ 31 Csac_A_G_5_X_F2 24.5% gatttgtatgcggtttcataaagatttgacatggtttttgcaaagtttctggcagcagct----ggatagacggaagactttga-ggtggctatatagcttgatttttctggcttgatgtgagttttccacagatgttttgatataaaaacattgacagggatgcataatcttgatataataaaatcaa-----------------------------------------gcttttttacgt------------ 32 Cobs_A_G_9_X_F2 24.5% aatttggacacggtttcatttagatgtggtaagattttgagttgatttttggcagctgct----ggatagacggaaggattcaa-gagtgttttatcgcttgaatttactgaactgtgtgctgttttgatatgatgtactgatataaaaacattgacaccattgcataaagttgatataataaaatcaa-----------------------------------------gctttccaacgt------------ 33 Cobs_A_G_8_X_F2 23.7% aatttggacacggtttcatttagatgtggtaagattttgagttgatttctggcagctgct----ggatagacggaggggttcga-gagtgttttatcccttgaattttctgaactgtgtgttattttgatatgatgtactgatataaaaacattgacaccattgcataaagttgatataataaaatcaa-----------------------------------------gctttccaacgt------------ 34 Cobs_A_G_6_X_F2 22.8% attttgtactcggtttcagtacctataccacagactttgaaataattgctggcagtagct----ggatagacggaaagaataga-tgagactttagagcttgatttttctgaactgtgcaggattttgatatgatgtactgatataaaaacattgacaccattgcataaagttgatataataaaatcaa-----------------------------------------gctttccaacgt------------ 35 Ckri_A_G_1_X_F2 27.6% acaaaggagatacttgctaaatcaaacagaaaaggtttagttcagtatttttgagag--------------------------caacttcctaaatatattgttcatgatgaaatatta--------------------------aaagatattgtccaaaaattaaatagtgaagatgat------gatttgtagccccctgtggagatagaaacttaattttctttgcattttttaatataaatgccatttt consensus/90% sssssssssssusTTTsusussssssssssussGsssssssssuuTsssssssAusssCs....GGuTsGACuGsAuuusssu..sssssTssssTsssTTGAsssssssGsssTssss.....................................................ssuTATAATAuAAssAA.........................................ssTssssAAsss............ |
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