Bioinformatics - Journal Club
Dates and locations of the joint Bioinformatics Journal Club of Uni Freiburg and
MPI of Immunobiology and Epigenetics in 2012/13.
Date
- Thursday biweekly at 10:00 between October 2012 and July 2013
Locations
- Building 106, Room 04-007, Uni Freiburg, Faculty of
Engineering, Georges-Köhler-Allee 106
- Jenuwein Seminar Room (2nd floor) / Lecture Hall (ground floor),
MPI IE, Stübeweg 51
Journal Club
| Date |
Location |
Time |
Speaker |
Paper |
| 18.10. |
MPI |
10:30 |
Thomas Manke |
Thomas-Chollier et al. Transcription factor binding predictions using
TRAP for the analysis of ChIP-seq data and regulatory SNPs. Nat
Protoc, 2011.
Roider et al.
Predicting transcription factor affinities to DNA from a biophysical
model. Bioinformatics, 2007. |
| 08.11. |
Uni |
10:00 |
Fabrizio Costa |
Efficient graph tools for bioinformatics applications |
| 15.11. |
MPI |
10:00 |
Fidel Ramirez |
Li et al.
IDR analysis 101 Measuring consistency between replicates in
high-throughput experiments. |
| 29.11. |
Uni |
10:00 |
Daniel Maticzka |
Baltz et al.
The mRNA-bound proteome and its global occupancy profile on protein-
coding transcripts. Mol Cell, 2012.
Castello et al.
Insights into RNA Biology from an atlas of mammalian mRNA-binding
proteins. Cell, 2012. |
| 10.01. |
MPI |
10:00 |
Andreas Richter |
Shen et al.
A map of the cis-regulatory sequences in the mouse genome. Nature,
2012. |
| 24.01. |
Uni |
10:00 |
Kousik Kundu |
Akiva et al.
A dynamic view of domain-motif interactions. PLoS Comput Biol, 2012. |
| 07.02. |
MPI |
10:00 |
Maxim Barenboim |
Maurano et al.
Systematic localization of common disease-associated variation in
regulatory DNA. Science, 2012. |
| 28.02. |
Uni |
10:30 |
Steffen Heyne |
Tabach et al.
Identification of small RNA pathway genes using patterns of
phylogenetic conservation and divergence. Nature, 2013. |
| 07.03. |
MPI |
10:00 |
Barbara Hummel |
Sanyal et al.
The long-range interaction landscape of gene promoters. Nature,
2012. |
| 21.03. |
Uni |
10:00 |
Sita Lange |
Khorshid et al.
A biophysical miRNA-mRNA interaction model infers canonical and
noncanonical targets. Nat Methods, 2013. |
| 04.04. |
MPI |
10:00 |
Friederike Mühlpfordt |
Birchler.
Claims and counterclaims of X-chromosome compensation.
Nat Struct Mol Biol, 2012. |
| 18.04. |
Uni, Building 103, Room 01-014 |
10:00 |
Pavan Videm |
Fasold et al.
DARIO: a ncRNA detection and analysis tool for next-generation
sequencing experiments. NAR, 2011.
Langenberger et al.
Identification and classification of small RNAs in transcriptome
sequence data. PSB, 2010.
Erhard and
Zimmer. Classification of ncRNAs using position and size information in deep
sequencing data. Bioinformatics, 2010. |
| 02.05. |
MPI |
10:00 |
cancelled |
|
| 16.05. |
Uni |
10:00 |
Robert Kleinkauf |
Ditzler et
al. High-throughput sequence analysis reveals structural diversity and
improved potency among RNA inhibitors of HIV reverse transcriptase. NAR,
2013. |
| 06.06. |
MPI |
10:00 |
Sarah Diehl |
Grabherr et
al. Full-length transcriptome assembly from RNA-Seq data without a
reference genome (Trinity). Nat Biotech, 2011. |
| 13.06. |
Uni |
10:00 |
Christina Schmiedl |
Levin et al.
A global sampling approach to designing and reengineering RNA secondary
structures. NAR, 2012. |
| 27.06. |
MPI |
10:00 |
cancelled |
|
| 11.07. |
Uni |
10:00 |
Omar Alkhanbashi |
van der Oost.
Molecular biology. New tool for genome surgery. Science, 2013.
Gaj et al.
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends
Biotechnol, 2013. |
| 25.07. |
MPI |
10:00 |
cancelled |
|
